Literature DB >> 31192081

Draft genome sequence of a cold-adapted phosphorous-solubilizing Pseudomonas koreensis P2 isolated from Sela Lake, India.

Alok Kumar Srivastava1, Pragya Saxena1, Anjney Sharma1, Ruchi Srivastava1, Hena Jamali1, Akhilendra Pratap Bharati1, Jagriti Yadav1, Anchal Kumar Srivastava1, M Kumar1, Hillol Chakdar1, Prem Lal Kashyap2, Anil Kumar Saxena1.   

Abstract

The draft genome sequence of a cold-adapted phosphorus-solubilizing strain Pseudomonas koreensis P2 isolated from the Sela Lake contains 6,436,246 bp with G + C content of 59.8%. The genome sequence includes 5743 protein coding genes, 68 non-protein coding genes, 1007 putative proteins, 5 rRNA genes, 64 tRNAs and two prophage regions in 40 contigs. Besides these, genes involved in phosphate solubilization, siderophore production, iron uptake, heat shock and cold shock tolerance, multidrug resistance and glycine-betaine production were also identified.

Entities:  

Keywords:  Genome; PGPR; Phosphate solubilization; Phosphorus (P); Pseudomonas koreensis

Year:  2019        PMID: 31192081      PMCID: PMC6556163          DOI: 10.1007/s13205-019-1784-7

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  28 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  Conservation of the Pho regulon in Pseudomonas fluorescens Pf0-1.

Authors:  Russell D Monds; Peter D Newell; Julia A Schwartzman; George A O'Toole
Journal:  Appl Environ Microbiol       Date:  2006-03       Impact factor: 4.792

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

Review 4.  Plant-growth-promoting rhizobacteria.

Authors:  Ben Lugtenberg; Faina Kamilova
Journal:  Annu Rev Microbiol       Date:  2009       Impact factor: 15.500

5.  Rapid in situ assay for indoleacetic Acid production by bacteria immobilized on a nitrocellulose membrane.

Authors:  J M Bric; R M Bostock; S E Silverstone
Journal:  Appl Environ Microbiol       Date:  1991-02       Impact factor: 4.792

6.  Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities.

Authors:  Farah Ahmad; Iqbal Ahmad; M S Khan
Journal:  Microbiol Res       Date:  2006-06-02       Impact factor: 5.415

7.  Functional genomics of stress response in Pseudomonas putida KT2440.

Authors:  Oleg N Reva; Christian Weinel; Miryam Weinel; Kerstin Böhm; Diana Stjepandic; Jörg D Hoheisel; Burkhard Tümmler
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

8.  Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea.

Authors:  Soon Wo Kwon; Jong Shik Kim; In Cheol Park; Sang Hong Yoon; Duck Hwan Park; Chun Keun Lim; Seung Joo Go
Journal:  Int J Syst Evol Microbiol       Date:  2003-01       Impact factor: 2.747

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

View more
  6 in total

1.  Degradation of acetochlor and beneficial effect of phosphate-solubilizing Bacillus sp. ACD-9 on maize seedlings.

Authors:  Haifeng Li; Yuanli Wang; Jiake Fu; Shuang Hu; Jianhang Qu
Journal:  3 Biotech       Date:  2020-01-24       Impact factor: 2.406

2.  Revealing the potential of Klebsiella pneumoniae PVN-1 for plant beneficial attributes by genome sequencing and analysis.

Authors:  Varsha Jha; Hemant Purohit; Nishant A Dafale
Journal:  3 Biotech       Date:  2021-10-25       Impact factor: 2.406

3.  Transcriptome Analysis to Understand Salt Stress Regulation Mechanism of Chromohalobacter salexigens ANJ207.

Authors:  Alok Kumar Srivastava; Ruchi Srivastava; Anjney Sharma; Akhilendra Pratap Bharati; Jagriti Yadav; Alok Kumar Singh; Praveen Kumar Tiwari; Anchal Kumar Srivatava; Hillol Chakdar; Prem Lal Kashyap; Anil Kumar Saxena
Journal:  Front Microbiol       Date:  2022-06-30       Impact factor: 6.064

4.  Analysis of Biosynthetic Gene Clusters, Secretory, and Antimicrobial Peptides Reveals Environmental Suitability of Exiguobacterium profundum PHM11.

Authors:  Alok Kumar Srivastava; Ruchi Srivastava; Akhilendra Pratap Bharati; Alok Kumar Singh; Anjney Sharma; Sudipta Das; Praveen Kumar Tiwari; Anchal Kumar Srivastava; Hillol Chakdar; Prem Lal Kashyap; Anil Kumar Saxena
Journal:  Front Microbiol       Date:  2022-02-03       Impact factor: 5.640

5.  Genomic insights into a plant growth-promoting Pseudomonas koreensis strain with cyclic lipopeptide-mediated antifungal activity.

Authors:  Yilin Gu; Yi-Nan Ma; Jing Wang; Zhenyuan Xia; Hai-Lei Wei
Journal:  Microbiologyopen       Date:  2020-06-15       Impact factor: 3.139

Review 6.  Psychrophilic Bacterial Phosphate-Biofertilizers: A Novel Extremophile for Sustainable Crop Production under Cold Environment.

Authors:  Asfa Rizvi; Bilal Ahmed; Mohammad Saghir Khan; Shahid Umar; Jintae Lee
Journal:  Microorganisms       Date:  2021-11-28
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.