Literature DB >> 31191208

Co-Occurrence of Leber Congenital Amaurosis and Meckel Syndrome Type 1 in a Fetus: Is There a Lesson to Be Learned?

Karthik Tallapaka1,2, Shagun Aggarwal1,2, Amrita Bhattacherjee2, Aneek Das Bhowmik2, Ashwin Dalal1,2.   

Abstract

A patient referred for prenatal diagnostics, after first-trimester ultrasound due to a previous child with Leber congenital amaurosis, was suggestive of a Meckel syndrome-like phenotype. Fetal autopsy confirmed the multiple anomalies, and whole-exome sequencing of the fetal DNA identified a pathogenic variant in the RPGRIP1 gene, previously identified in the elder sibling, and a variant causative of Meckel syndrome 1 in the MKS1 gene. Reporting the MKS1 mutation, which was present in heterozygous state in the elder sibling, as a secondary finding would have enabled the parents to be tested for carrier status of the same variant and appropriate counseling could have been provided prior to the onset of the pregnancy. Although the information may not be of great benefit in cases where the ultrasonographic changes can be recognized early, it would be of definitive help where diagnostic imaging in early pregnancy is not possible.

Entities:  

Keywords:  Exome sequencing; Leber congenital amaurosis; Meckel syndrome; Secondary findings

Year:  2019        PMID: 31191208      PMCID: PMC6528073          DOI: 10.1159/000496280

Source DB:  PubMed          Journal:  Mol Syndromol        ISSN: 1661-8769


  11 in total

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Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

2.  Pathogenic variants for Mendelian and complex traits in exomes of 6,517 European and African Americans: implications for the return of incidental results.

Authors:  Holly K Tabor; Paul L Auer; Seema M Jamal; Jessica X Chong; Joon-Ho Yu; Adam S Gordon; Timothy A Graubert; Christopher J O'Donnell; Stephen S Rich; Deborah A Nickerson; Michael J Bamshad
Journal:  Am J Hum Genet       Date:  2014-07-31       Impact factor: 11.025

3.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

4.  ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.

Authors:  Kai Wang; Mingyao Li; Hakon Hakonarson
Journal:  Nucleic Acids Res       Date:  2010-07-03       Impact factor: 16.971

5.  Whole exome sequencing identifies a novel frameshift mutation in GPC3 gene in a patient with overgrowth syndrome.

Authors:  Aneek Das Bhowmik; Ashwin Dalal
Journal:  Gene       Date:  2015-08-29       Impact factor: 3.688

6.  Spectrum of MKS1 and MKS3 mutations in Meckel syndrome: a genotype-phenotype correlation. Mutation in brief #960. Online.

Authors:  Rana Khaddour; Ursula Smith; Lekbir Baala; Jéléna Martinovic; Davina Clavering; Rizwana Shaffiq; Catherine Ozilou; Andrew Cullinane; Mira Kyttälä; Stavit Shalev; Sophie Audollent; Camille d'Humières; Noman Kadhom; Chantal Esculpavit; Géraldine Viot; Claire Boone; Christine Oien; Férechté Encha-Razavi; Philip A Batman; Christopher P Bennett; C Geoffrey Woods; Joelle Roume; Stanislas Lyonnet; Emmanuelle Génin; Martine Le Merrer; Arnold Munnich; Marie-Claire Gubler; Phillip Cox; Fiona Macdonald; Michel Vekemans; Colin A Johnson; Tania Attié-Bitach
Journal:  Hum Mutat       Date:  2007-05       Impact factor: 4.878

7.  Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Authors:  Sue Richards; Nazneen Aziz; Sherri Bale; David Bick; Soma Das; Julie Gastier-Foster; Wayne W Grody; Madhuri Hegde; Elaine Lyon; Elaine Spector; Karl Voelkerding; Heidi L Rehm
Journal:  Genet Med       Date:  2015-03-05       Impact factor: 8.822

8.  Fast and accurate long-read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2010-01-15       Impact factor: 6.937

9.  ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing.

Authors:  Robert C Green; Jonathan S Berg; Wayne W Grody; Sarah S Kalia; Bruce R Korf; Christa L Martin; Amy L McGuire; Robert L Nussbaum; Julianne M O'Daniel; Kelly E Ormond; Heidi L Rehm; Michael S Watson; Marc S Williams; Leslie G Biesecker
Journal:  Genet Med       Date:  2013-06-20       Impact factor: 8.822

Review 10.  Stakeholder views on secondary findings in whole-genome and whole-exome sequencing: a systematic review of quantitative and qualitative studies.

Authors:  Michael P Mackley; Benjamin Fletcher; Michael Parker; Hugh Watkins; Elizabeth Ormondroyd
Journal:  Genet Med       Date:  2016-09-01       Impact factor: 8.822

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