Literature DB >> 31190289

Forensic drowning site inference employing mixed pyrosequencing profile of DNA barcode gene (rbcL).

Ting Fang1, Shiping Liao1, Xiaogang Chen1, Yuancun Zhao1, Qiang Zhu1, Yueyan Cao1, Qiuyue Wang1, Shu Zhang1, Zehua Gao1, Yiwen Yang1, Yufang Wang2, Ji Zhang3.   

Abstract

The development of DNA barcoding method has given rise to a promising way of studying genetic taxonomy. Our previous study showed that pyrosequencing profile of 18S rDNA V7 hypervariable region can be used for identifying water sources without resolving the exact components of diatom colonies in water samples. In this continued study, we aimed to improve the established analysis method and to provide scientific evidence for forensic practices. A drowning animal model was set up by injecting mimic drowning fluid into the respiratory tract of the rabbit. In order to minimize the interference of animal DNA, the hypervariable region of chloroplast ribulose-1,5-bisphosphate carboxylase large unit gene (rbcL) was used as the pyrosequencing target region for the consistency analysis of plankton populations in tissues and water samples. After decoding the pyrosequencing profile of the targeted rbcL gene with the AdvISER-M-PYRO algorithm, the plankton colony that was inhaled into drowning animal lung tissue could be successfully traced back to the source of drowning fluid. Our data suggest that this method could be a reliable tool assisting forensic drowning site inference.

Entities:  

Keywords:  DNA barcode; Diatom; Drowning site inference; Forensic science; Plankton; Pyrosequencing; rbcL

Mesh:

Substances:

Year:  2019        PMID: 31190289     DOI: 10.1007/s00414-019-02075-4

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  11 in total

1.  A novel PCR-DGGE-based method for identifying plankton 16S rDNA for the diagnosis of drowning.

Authors:  Fanggang He; Daixin Huang; Liang Liu; Xiji Shu; Hui Yin; Xiaoting Li
Journal:  Forensic Sci Int       Date:  2007-10-04       Impact factor: 2.395

2.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

3.  Simple detection of bacterioplankton using a loop-mediated isothermal amplification (LAMP) assay: First practical approach to 72 cases of suspected drowning.

Authors:  Eiji Kakizaki; Ai Sonoda; Masahiro Sakai; Nobuhiro Yukawa
Journal:  Forensic Sci Int       Date:  2018-05-30       Impact factor: 2.395

4.  The number of diatoms recovered from the lungs and other organs in drowning deaths in bathwater.

Authors:  Kazutoshi Ago; Takahito Hayashi; Mihoko Ago; Mamoru Ogata
Journal:  Leg Med (Tokyo)       Date:  2011-05-11       Impact factor: 1.376

5.  Amplicon identification using SparsE representation of multiplex PYROsequencing signal (AdvISER-M-PYRO): application to bacterial resistance genotyping.

Authors:  Jérôme Ambroise; Yann Deccache; Leonid Irenge; Encho Savov; Annie Robert; Jean-Luc Gala
Journal:  Bioinformatics       Date:  2014-08-30       Impact factor: 6.937

6.  A valid method to determine the site of drowning.

Authors:  Rafael Carballeira; Duarte N Vieira; Manuel Febrero-Bande; José I Muñoz Barús
Journal:  Int J Legal Med       Date:  2017-11-08       Impact factor: 2.686

7.  Potential forensic biogeographic application of diatom colony consistency analysis employing pyrosequencing profiles of the 18S rDNA V7 region.

Authors:  Yuancun Zhao; Xiaogang Chen; Yiwen Yang; Xiaohong Zhao; Shu Zhang; Zehua Gao; Ting Fang; Yufang Wang; Ji Zhang
Journal:  Int J Legal Med       Date:  2018-05-07       Impact factor: 2.686

8.  Prevalence of diatom frustules in non-vegetarian foodstuffs and its implications in interpreting identification of diatom frustules in drowning cases.

Authors:  Law Yen Yen; P T Jayaprakash
Journal:  Forensic Sci Int       Date:  2006-10-04       Impact factor: 2.395

9.  Isolation of intact plankton from drowning lung tissue by centrifugation ina colloidal silica gradient.

Authors:  K Terazawa; T Takatori
Journal:  Forensic Sci Int       Date:  1980 Jul-Aug       Impact factor: 2.395

10.  The effect of enzyme digestion time on the detection of diatom species.

Authors:  Zhengliang Yu; Chao Liu; Huijun Wang; Ling Chen; Sunlin Hu; Jian Zhao
Journal:  Pak J Pharm Sci       Date:  2014-05       Impact factor: 0.684

View more
  1 in total

Review 1.  Life barcoded by DNA barcodes.

Authors:  Mali Guo; Chaohai Yuan; Leyan Tao; Yafei Cai; Wei Zhang
Journal:  Conserv Genet Resour       Date:  2022-08-15       Impact factor: 0.991

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.