| Literature DB >> 31187948 |
Adna Ašić1, Ramona Salazar, Niels Storm, Serkan Doğan, Wolfgang Höppner, Damir Marjanović, Dragan Primorac.
Abstract
AIM: To investigate the prevalence of common genetic variants that can serve as markers of thrombophilia and warfarin pharmacogenetics in Bosnia and Herzegovina.Entities:
Mesh:
Substances:
Year: 2019 PMID: 31187948 PMCID: PMC6563168
Source DB: PubMed Journal: Croat Med J ISSN: 0353-9504 Impact factor: 1.351
Demographic characteristics of study participants
| Characteristic | n (%) |
|---|---|
| 47 (36.2) | |
| 83 (63.8) | |
| 54 (41.5) | |
| 44 (33.8) | |
| 24 (18.5) | |
| 8 (6.2) | |
| 20 (15) | |
| 52 (40) | |
| 38 (29) | |
| 20 (15) |
Genotype frequencies (with absolute genotype numbers in parentheses) and allele frequencies of risk markers of thrombophilia in Bosnian-Herzegovinian population. Allele frequency values are presented as major and minor allele frequencies*
| Variant | Genotype frequency, % (n) | Allele frequency | |||||
|---|---|---|---|---|---|---|---|
| major homozygous | heterozygous | minor homozygous | major | minor | |||
| 95.4 (124) | 4.6 (6) | 0.0 (0) | 0.977 | 0.023 | |||
| 43.8 (57) | 46.2 (60) | 10.0 (13) | 0.669 | 0.331 | |||
| 30.0 (39) | 50.8 (66) | 19.2 (25) | 0.554 | 0.446 | |||
| 98.5 (128) | 1.5 (2) | 0.0 (0) | 0.992 | 0.008 | |||
| 46.2 (60) | 43.1 (56) | 10.8 (14) | 0.677 | 0.323 | |||
| 15.4 (20) | 51.5 (67) | 33.1 (43) | 0.412 | 0.588 | |||
| 50.0 (65) | 36.9 (48) | 13.1 (17) | 0.685 | 0.315 | |||
*F2, FII – factor II, F5 – factor V, F13A1 – factor XIII variant A1, FVL – factor V Leiden, MTHFR – methylenetetrahydrofolate reductase, PAI-1 – plasminogen activator inhibitor 1.
Genotype frequencies (with absolute genotype numbers in parentheses) and allele frequencies of markers of warfarin pharmacogenetics in Bosnian-Herzegovinian population. Allele frequency values are presented as major and minor allele frequencies*
| Variant | Genotype distribution, % (n) | Allele frequency | |||||
|---|---|---|---|---|---|---|---|
| major homozygous | heterozygous | minor homozygous | major | minor | |||
| 74.4 (96) | 24.8 (32) | 0.8 (1) | 0.868 | 0.132 | |||
| 82.9 (107) | 16.3 (21) | 0.8 (1) | 0.911 | 0.089 | |||
| 39.5 (51) | 45.7 (59) | 14.7 (19) | 0.624 | 0.376 | |||
| 100.0 (129) | 0.0 (0) | 0.0 (0) | 1.000 | 0.000 | |||
| 100.0 (129) | 0.0 (0) | 0.0 (0) | 1.000 | 0.000 | |||
| 39.5 (51) | 45.7 (59) | 14.7 (19) | 0.624 | 0.376 | |||
| 39.5 (51) | 45.7 (59) | 14.7 (19) | 0.624 | 0.376 | |||
*CYP2C9 – cytochrome P450 2C9, VKORC1 – vitamin K epoxide reductase complex subunit 1.
Combined VKORC1 c.-1639G>A and CYP2C9*2 and *3 genotypes in the study population from Bosnia and Herzegovina and genotype classification into extensive, intermediate, and poor metabolizer classes. The prediction of metabolizer class for each genotype was done according to Food and Drug Administration (FDA) recommendations from 2015 (23)*
| Number of participants (n) | Percentage distribution | Metabolizer class | ||
|---|---|---|---|---|
| GG | *1/*1 | 30 | 23.3 | extensive |
| *1/*2 | 11 | 8.5 | extensive | |
| *1/*3 | 7 | 5.4 | intermediate | |
| *2/*2 | 0 | 0.0 | N/A | |
| *2/*3 | 3 | 2.3 | intermediate | |
| *3/*3 | 0 | 0.0 | N/A | |
| GA | *1/*1 | 33 | 25.6 | extensive |
| *1/*2 | 15 | 11.6 | intermediate | |
| *1/*3 | 9 | 7.0 | intermediate | |
| *2/*2 | 1 | 0.8 | intermediate | |
| *2/*3 | 0 | 0.0 | N/A | |
| *3/*3 | 1 | 0.8 | poor | |
| AA | *1/*1 | 14 | 10.9 | intermediate |
| *1/*2 | 3 | 2.3 | intermediate | |
| *1/*3 | 2 | 1.6 | poor | |
| *2/*2 | 0 | 0.0 | N/A | |
| *2/*3 | 0 | 0.0 | N/A | |
| *3/*3 | 0 | 0.0 | N/A |
*CYP2C9 – cytochrome P450 2C9, VKORC1 – vitamin K epoxide reductase complex subunit 1.
Summary of previous research of thrombophilic marker prevalence in Bosnia and Herzegovina*
| Study population | MAF | Major findings | Reference | |
|---|---|---|---|---|
| Healthy B&H population | 130 | FVL 0.023
FII G20210A 0.008
| N/A | Current study |
| Healthy women | 67 | FVL 0.000 | N/A | ( |
| South-Eastern B&H healthy population | 207 | N/A | ( | |
| Healthy adults | 100 | FVL 0.06
FII G20210A 0.06
| N/A | ( |
| 111 DVT patients and 207 healthy controls | 318 | FVL 0.0194 in controls and 0.105 in patients
FII G20210A 0.000 in controls and 0.0136 in patients
| FVL variant was significantly more common in DVT patients than in controls | ( |
| 154 women who experienced PL and 154 female controls | 308 | FVL 0.039 in both controls and patients
FII G20210A 0.016 in controls and 0.019 in patients
| none of three investigated markers was significantly correlated with the risk of PL | ( |
| 60 women who experienced RPL and 80 female controls | 140 | FVL 0.0188 in controls and 0.075 in patients
FII G20210A 0.0063 in controls and 0.025 in patients
| significant difference in allele distribution between the study groups for FVL and | ( |
*B&H – Bosnia and Herzegovina, DVT – deep vein thrombosis, FII – factor II, FVL – factor V Leiden, FXIIIA1 – factor XIII variant A1, MAF – minor allele frequency, MTHFR – methylenetetrahydrofolate reductase, PAI-1 – plasminogen activator inhibitor 1, PL – pregnancy loss, RPL – recurrent pregnancy loss.
The summary of the 1000 Genomes Project phase III findings (31). Minor allele frequency of six alleles in five global populations is given, namely African, admixed American, East Asian, European, and South Asian. Data for PAI-1 4G/5G were not available. Complete data set was retrieved from PharmGKB database (32)*
| African (n = 1322) | Admixed American (n = 694) | East Asian (n = 1008) | European (n = 1006) | South Asian (n = 978) | |
|---|---|---|---|---|---|
| not detected | 0.010 | not detected | 0.012 | 0.011 | |
| not detected | 0.014 | not detected | 0.008 | not detected | |
| 0.090 | 0.474 | 0.296 | 0.365 | 0.119 | |
| 0.151 | 0.151 | 0.219 | 0.313 | 0.417 | |
| 0.247 | 0.372 | 0.393 | 0.594 | 0.492 | |
| 0.164 | 0.269 | 0.002 | 0.242 | 0.093 |
*FII – Factor II, FVL – Factor V Leiden, FXIIIA1 – factor XIII variant A1, MTHFR – methylenetetrahydrofolate reductase, PAI-1 – plasminogen activator inhibitor 1.