| Literature DB >> 31187946 |
Yating Fang, Tong Xie, Qiong Lan, Xiaoye Jin, Yuxin Guo, Yongsong Zhou, Jiangwei Yan, Bofeng Zhu1.
Abstract
AIM: To determine allele frequencies and forensic statistics of 22 autosomal short tandem repeat loci in Chinese Mongolian population.Entities:
Mesh:
Year: 2019 PMID: 31187946 PMCID: PMC6563180
Source DB: PubMed Journal: Croat Med J ISSN: 0353-9504 Impact factor: 1.351
The allele frequencies and forensic parameters for 22 autosomal short tandem repeat loci in Xinjiang Mongolian population (n = 134)*
| Alleles | D1S1656 | D2S1338 | D3S3045 | D4S2366 | D5S2500 | D6S477 | D7S3048 | D8S1132 | D9S925 | D10S1435 | D11S2368 | D12S391 | D13S325 | D14S608 | D15S659 | D16S539 | D17S1290 | D18S535 | D19S253 | D20S470 | D21S1270 | D22-GATA198B05 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6 | 0.0410 | 0.0224 | ||||||||||||||||||||
| 7 | 0.0075 | 0.1754 | 0.1679 | |||||||||||||||||||
| 8 | 0.0037 | 0.0187 | 0.0149 | 0.0149 | 0.0112 | 0.0037 | ||||||||||||||||
| 9 | 0.2761 | 0.2948 | 0.0037 | 0.1194 | 0.3022 | 0.1940 | 0.0075 | 0.0187 | ||||||||||||||
| 9.2 | 0.0037 | |||||||||||||||||||||
| 10 | 0.0037 | 0.0485 | 0.0746 | 0.0373 | 0.0149 | 0.0336 | 0.1978 | 0.0187 | 0.1045 | 0.0224 | 0.0373 | 0.0112 | 0.1231 | 0.3022 | ||||||||
| 10.2 | 0.0112 | |||||||||||||||||||||
| 11 | 0.0448 | 0.0485 | 0.2537 | 0.2910 | 0.0075 | 0.0112 | 0.1381 | 0.2201 | 0.1269 | 0.1903 | 0.0448 | 0.0224 | 0.0858 | 0.0373 | 0.1007 | |||||||
| 11.2 | 0.0037 | |||||||||||||||||||||
| 12 | 0.0560 | 0.1119 | 0.1903 | 0.1716 | 0.0448 | 0.0075 | 0.3657 | 0.1828 | 0.2239 | 0.1903 | 0.0037 | 0.1157 | 0.3657 | 0.0672 | 0.0597 | |||||||
| 12.2 | 0.0112 | |||||||||||||||||||||
| 12.3 | 0.0037 | 0.0560 | ||||||||||||||||||||
| 13 | 0.1007 | 0.1978 | 0.0709 | 0.0485 | 0.2463 | 0.2313 | 0.0485 | 0.1157 | 0.1716 | 0.2687 | 0.2463 | 0.0970 | 0.1231 | |||||||||
| 13.3 | 0.0037 | 0.0224 | ||||||||||||||||||||
| 14 | 0.0485 | 0.2239 | 0.0933 | 0.0485 | 0.1679 | 0.1082 | 0.1754 | 0.0597 | 0.0261 | 0.0149 | 0.2687 | 0.0858 | 0.1679 | 0.2351 | 0.0037 | |||||||
| 14.3 | 0.0224 | |||||||||||||||||||||
| 15 | 0.2948 | 0.0037 | 0.0858 | 0.0187 | 0.2799 | 0.2276 | 0.0037 | 0.2761 | 0.0299 | 0.0037 | 0.0149 | 0.1940 | 0.2052 | 0.0821 | 0.0187 | 0.1940 | 0.0709 | |||||
| 15.3 | 0.0112 | |||||||||||||||||||||
| 16 | 0.2612 | 0.0075 | 0.0075 | 0.1007 | 0.2052 | 0.0075 | 0.3022 | 0.0149 | 0.0149 | 0.1642 | 0.3582 | 0.0112 | 0.1381 | 0.0075 | 0.0597 | |||||||
| 16.3 | 0.0224 | 0.0037 | ||||||||||||||||||||
| 17 | 0.0672 | 0.0821 | 0.0187 | 0.0373 | 0.0075 | 0.0821 | 0.1866 | 0.1791 | 0.1231 | 0.0373 | 0.0746 | 0.1493 | 0.0896 | 0.1157 | ||||||||
| 17.3 | 0.0560 | 0.0037 | 0.0112 | |||||||||||||||||||
| 18 | 0.1045 | 0.0075 | 0.1306 | 0.2090 | 0.0933 | 0.1157 | 0.2500 | 0.0448 | 0.0224 | 0.1418 | 0.0149 | 0.1007 | ||||||||||
| 18.3 | 0.0187 | |||||||||||||||||||||
| 19 | 0.0037 | 0.1791 | 0.0075 | 0.0858 | 0.1530 | 0.0075 | 0.1455 | 0.1530 | 0.2425 | 0.0522 | 0.0149 | 0.1045 | ||||||||||
| 19.3 | 0.0075 | |||||||||||||||||||||
| 20 | 0.1045 | 0.0037 | 0.1231 | 0.0933 | 0.1381 | 0.1828 | 0.2724 | 0.0037 | 0.0037 | 0.1007 | ||||||||||||
| 20.3 | 0.0037 | |||||||||||||||||||||
| 21 | 0.0187 | 0.1082 | 0.1343 | 0.2463 | 0.0933 | 0.2052 | 0.2761 | |||||||||||||||
| 22 | 0.0522 | 0.0970 | 0.1269 | 0.1045 | 0.1007 | 0.1194 | 0.0037 | 0.1642 | ||||||||||||||
| 23 | 0.1455 | 0.1418 | 0.1530 | 0.0373 | 0.0597 | 0.0373 | 0.0634 | |||||||||||||||
| 24 | 0.1604 | 0.1791 | 0.0336 | 0.0112 | 0.0112 | 0.0261 | 0.0112 | |||||||||||||||
| 25 | 0.1045 | 0.1157 | 0.0037 | 0.0037 | ||||||||||||||||||
| 26 | 0.0224 | 0.0037 | ||||||||||||||||||||
| 27 | 0.0075 | 0.0075 | ||||||||||||||||||||
| 28 | 0.0075 | |||||||||||||||||||||
| MP | 0.0564 | 0.0330 | 0.0635 | 0.0792 | 0.0740 | 0.0661 | 0.0342 | 0.0441 | 0.0828 | 0.0972 | 0.0503 | 0.0478 | 0.0716 | 0.0626 | 0.0481 | 0.0783 | 0.0933 | 0.0764 | 0.1016 | 0.0363 | 0.0581 | 0.0468 |
| PD | 0.9436 | 0.9670 | 0.9365 | 0.9208 | 0.9260 | 0.9339 | 0.9658 | 0.9559 | 0.9172 | 0.9028 | 0.9497 | 0.9522 | 0.9284 | 0.9374 | 0.9519 | 0.9217 | 0.9067 | 0.9236 | 0.8984 | 0.9637 | 0.9419 | 0.9532 |
| PIC | 0.7980 | 0.8654 | 0.7838 | 0.7631 | 0.7615 | 0.7872 | 0.8600 | 0.8425 | 0.7427 | 0.7252 | 0.8215 | 0.8238 | 0.7778 | 0.8069 | 0.8272 | 0.7648 | 0.7532 | 0.7663 | 0.7279 | 0.8627 | 0.7930 | 0.8274 |
| PE | 0.6527 | 0.8168 | 0.6817 | 0.5963 | 0.5555 | 0.6384 | 0.7260 | 0.8015 | 0.5422 | 0.5034 | 0.7111 | 0.6963 | 0.5291 | 0.7409 | 0.5963 | 0.5689 | 0.5555 | 0.6242 | 0.5689 | 0.8321 | 0.6102 | 0.6963 |
| Ho | 0.8284 | 0.9104 | 0.8433 | 0.7985 | 0.7761 | 0.8209 | 0.8657 | 0.9030 | 0.7687 | 0.7463 | 0.8582 | 0.8507 | 0.7612 | 0.8731 | 0.7985 | 0.7836 | 0.7761 | 0.8134 | 0.7836 | 0.9179 | 0.8060 | 0.8507 |
| He | 0.8216 | 0.8810 | 0.8129 | 0.7958 | 0.7939 | 0.8162 | 0.8769 | 0.8620 | 0.7798 | 0.7634 | 0.8441 | 0.8458 | 0.8079 | 0.8328 | 0.8490 | 0.7979 | 0.7846 | 0.7988 | 0.7649 | 0.8785 | 0.8184 | 0.8476 |
| 0.8380 | 0.2931 | 0.3672 | 0.9386 | 0.6115 | 0.8884 | 0.6929 | 0.1685 | 0.7548 | 0.6413 | 0.6530 | 0.8733 | 0.1697 | 0.2112 | 0.1027 | 0.6794 | 0.8109 | 0.6735 | 0.6103 | 0.1629 | 0.7101 | 0.9204 |
*MP – matching probability; PD – power of discrimination; PIC – polymorphic information content; PE – power of exclusion; Ho – the observed heterozygosity; He – the expected heterozygosity; P – probability values of exact tests for Hardy-Weinberg equilibrium.
Figure 1Stacked histogram showing forensic parameters of 22 autosomal short tandem repeat loci in Xinjiang Mongolian population (n = 134).
The P values of the locus-by-locus comparisons based on the allele frequencies in Xinjiang Mongolian and other populations
| Loci | Northern Han | Guangdong Han | Chengdu Han | Xinjiang Hui | Xinjiang Uygur | Hainan Li | Hainan Han | Qinghai Tibetan |
|---|---|---|---|---|---|---|---|---|
| 0.6686 | 0.0968 | 0.0772 | 0.8338 | 0.0029 | <0.001 | <0.001 | 0.4330 | |
| 0.0186 | 0.0264 | 0.5024 | 0.0323 | 0.4565 | 0.1525 | — | — | |
| 0.1173 | 0.0362 | 0.0723 | 0.2092 | 0.0479 | <0.001 | 0.0010 | 0.8397 | |
| 0.0039 | 0.1232 | 0.0127 | 0.0029 | 0.1652 | <0.001 | 0.0029 | 0.0010 | |
| 0.5171 | 0.3118 | 0.8993 | 0.5699 | 0.0968 | 0.4780 | 0.1476 | 0.6256 | |
| 0.0978 | 0.0968 | 0.1867 | 0.0254 | 0.0401 | <0.001 | 0.0244 | 0.1613 | |
| 0.0821 | 0.3324 | 0.0313 | 0.1496 | 0.0557 | <0.001 | <0.001 | 0.0039 | |
| <0.001 | 0.0303 | 0.0166 | 0.0039 | 0.3099 | <0.001 | <0.001 | 0.0010 | |
| 0.0538 | 0.0147 | 0.4291 | 0.2141 | 0.0694 | 0.1417 | — | — | |
| 0.4702 | 0.4555 | 0.5816 | 0.4330 | 0.1271 | 0.5562 | 0.9394 | 0.5533 | |
| 0.1916 | 0.0616 | 0.5748 | 0.0420 | 0.0372 | 0.0274 | 0.1369 | 0.1623 | |
| 0.2258 | 0.0127 | 0.1193 | 0.5142 | 0.0635 | 0.0098 | — | — | |
| 0.6061 | 0.5435 | 0.7380 | 0.6334 | 0.4311 | 0.0049 | 0.1281 | 0.4096 | |
| 0.0284 | 0.0156 | 0.0068 | 0.0205 | <0.001 | 0.0020 | <0.001 | 0.1144 | |
| 0.7185 | 0.0782 | 0.1183 | 0.6501 | 0.2483 | <0.001 | 0.0156 | 0.2434 | |
| 0.0362 | 0.1017 | 0.0117 | 0.0098 | 0.0010 | <0.001 | — | — | |
| 0.1271 | 0.0362 | 0.0313 | 0.3558 | 0.2708 | <0.001 | 0.0010 | 0.1408 | |
| 0.7322 | 0.0411 | 0.8974 | 0.7175 | 0.0899 | <0.001 | <0.001 | 0.2718 | |
| 0.0215 | 0.1720 | 0.3157 | 0.1584 | 0.3529 | 0.0606 | 0.0020 | 0.6843 | |
| 0.0938 | 0.0547 | 0.3783 | 0.0156 | 0.0284 | 0.0039 | — | — | |
| 0.1105 | 0.0880 | 0.3969 | 0.2297 | 0.0020 | 0.0108 | — | — | |
| 0.1173 | 0.2669 | 0.4282 | 0.2835 | 0.0274 | <0.001 | 0.0469 | 0.1593 |
The pairwise genetic distance values based on the allele frequencies of 16 loci in Xinjiang Mongolian and eight reference populations
| Populations | Xinjiang Mongolian | Xinjiang Hui | Northern Han | Xinjiang Uygur | Qinghai Tibetan | Chengdu Han | Guangdong Han | Hainan Han |
|---|---|---|---|---|---|---|---|---|
| 0.0113 | ||||||||
| 0.0115 | 0.0035 | |||||||
| 0.0141 | 0.0105 | 0.0134 | ||||||
| 0.0163 | 0.0067 | 0.0073 | 0.0160 | |||||
| 0.0175 | 0.0077 | 0.0067 | 0.0180 | 0.0107 | ||||
| 0.0212 | 0.0116 | 0.0105 | 0.0208 | 0.0155 | 0.0121 | |||
| 0.0217 | 0.0117 | 0.0096 | 0.0206 | 0.0160 | 0.0099 | 0.0108 | ||
| 0.0379 | 0.0253 | 0.0242 | 0.0346 | 0.0305 | 0.0205 | 0.0214 | 0.0135 |
The pairwise fixation index values based on allele frequencies of 16 loci in Xinjiang Mongolian and six reference populations
| Populations | Xinjiang Mongolian | Xinjiang Hui | Northern Han | Xinjiang Uygur | Guangdong Han | Hainan Han |
|---|---|---|---|---|---|---|
| 0.0014 | ||||||
| 0.0015 | 0.0002 | |||||
| 0.0023 | 0.0031 | 0.004 | ||||
| 0.0033 | 0.0025 | 0.0015 | 0.0046 | |||
| 0.0059 | 0.0046 | 0.0036 | 0.0072 | 0.0008 | ||
| 0.0138 | 0.012 | 0.0109 | 0.0133 | 0.0053 | 0.0033 |
Figure 2Heat map (A) showing the pairwise genetic distances between Xinjiang Mongolian and eight other populations based on allele frequencies of 16 overlapping loci. Heat map (B) showing pairwise fixation index (Fst) values of Xinjiang Mongolian and six other populations based on the data of 16 overlapping loci.
Figure 3Phylogenetic tree (A) showing the relationships between Xinjiang Mongolian and eight other populations based on the results of genetic distance analysis. Phylogenetic tree (B) showing the relationships between Xinjiang Mongolian and eight other populations based on the allele frequencies of 16 overlapping loci.
Figure 4Principal component analysis based on the allele frequencies of 16 short tandem repeat loci of Xinjiang Mongolian and eight other populations.