Literature DB >> 31187121

Ovarian cancer and the evolution of subtype classifications using transcriptional profiling†.

David P Cook1,2, Barbara C Vanderhyden1,2,3.   

Abstract

Ovarian cancer is a complex disease with multiple subtypes, each having distinct histopathologies and variable responses to treatment. This review highlights the technological milestones and the studies that have applied them to change our definitions of ovarian cancer. Over the past 50 years, technologies such as microarrays and next-generation sequencing have led to the discovery of molecular alterations that define each of the ovarian cancer subtypes and has enabled further subclassification of the most common subtype, high-grade serous ovarian cancer (HGSOC). Improvements in mutational profiling have provided valuable insight, such as the ubiquity of TP53 mutations in HGSOC tumors. However, the information derived from these technological advances has also revealed the immense heterogeneity of this disease, from variation between patients to compositional differences within single masses. In looking forward, the emerging technologies for single-cell and spatially resolved transcriptomics will allow us to better understand the cellular composition and structure of tumors and how these contribute to the molecular subtypes. Attempts to incorporate the complexities ovarian cancer has resulted in increasing sophistication of model systems, and the increased precision in molecular profiling of ovarian cancers has already led to the introduction of inhibitors of poly (ADP-ribose) polymerases as a new class of treatments for ovarian cancer with DNA repair deficiencies. Future endeavors to define increasingly accurate classification strategies for ovarian cancer subtypes will allow for confident prediction of disease progression and provide important insight into potentially targetable molecular mechanisms specific to each subtype.
© The Author(s) 2019. Published by Oxford University Press on behalf of Society for the Study of Reproduction.

Entities:  

Keywords:  animal models; microarray; ovarian cancer; single-cell RNA sequencing; subtype; transcription

Mesh:

Substances:

Year:  2019        PMID: 31187121     DOI: 10.1093/biolre/ioz099

Source DB:  PubMed          Journal:  Biol Reprod        ISSN: 0006-3363            Impact factor:   4.285


  8 in total

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2.  Development and Validation of the Gene Expression Predictor of High-grade Serous Ovarian Carcinoma Molecular SubTYPE (PrOTYPE).

Authors:  Aline Talhouk; Joshy George; Chen Wang; Ellen L Goode; Susan J Ramus; Jennifer A Doherty; David D Bowtell; Michael S Anglesio; Timothy Budden; Tuan Zea Tan; Derek S Chiu; Stefan Kommoss; Huei San Leong; Stephanie Chen; Maria P Intermaggio; Blake Gilks; Tayyebeh M Nazeran; Mila Volchek; Wafaa Elatre; Rex C Bentley; Janine Senz; Amy Lum; Veronica Chow; Hanwei Sudderuddin; Robertson Mackenzie; Samuel C Y Leong; Geyi Liu; Dustin Johnson; Billy Chen; Aocs Group; Jennifer Alsop; Susana N Banerjee; Sabine Behrens; Clara Bodelon; Alison H Brand; Louise Brinton; Michael E Carney; Yoke-Eng Chiew; Kara L Cushing-Haugen; Cezary Cybulski; Darren Ennis; Sian Fereday; Renée T Fortner; Jesús García-Donas; Aleksandra Gentry-Maharaj; Rosalind Glasspool; Teodora Goranova; Casey S Greene; Paul Haluska; Holly R Harris; Joy Hendley; Brenda Y Hernandez; Esther Herpel; Mercedes Jimenez-Linan; Chloe Karpinskyj; Scott H Kaufmann; Gary L Keeney; Catherine J Kennedy; Martin Köbel; Jennifer M Koziak; Melissa C Larson; Jenny Lester; Liz-Anne Lewsley; Jolanta Lissowska; Jan Lubiński; Hugh Luk; Geoff Macintyre; Sven Mahner; Iain A McNeish; Janusz Menkiszak; Nikilyn Nevins; Ana Osorio; Oleg Oszurek; José Palacios; Samantha Hinsley; Celeste L Pearce; Malcolm C Pike; Anna M Piskorz; Isabelle Ray-Coquard; Valerie Rhenius; Cristina Rodriguez-Antona; Raghwa Sharma; Mark E Sherman; Dilrini De Silva; Naveena Singh; Peter Sinn; Dennis Slamon; Honglin Song; Helen Steed; Euan A Stronach; Pamela J Thompson; Aleksandra Tołoczko; Britton Trabert; Nadia Traficante; Chiu-Chen Tseng; Martin Widschwendter; Lynne R Wilkens; Stacey J Winham; Boris Winterhoff; Alicia Beeghly-Fadiel; Javier Benitez; Andrew Berchuck; James D Brenton; Robert Brown; Jenny Chang-Claude; Georgia Chenevix-Trench; Anna deFazio; Peter A Fasching; María J García; Simon A Gayther; Marc T Goodman; Jacek Gronwald; Michelle J Henderson; Beth Y Karlan; Linda E Kelemen; Usha Menon; Sandra Orsulic; Paul D P Pharoah; Nicolas Wentzensen; Anna H Wu; Joellen M Schildkraut; Mary Anne Rossing; Gottfried E Konecny; David G Huntsman; Ruby Yun-Ju Huang
Journal:  Clin Cancer Res       Date:  2020-06-17       Impact factor: 13.801

Review 3.  EMT Factors and Metabolic Pathways in Cancer.

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Review 4.  Applications of single-cell sequencing in cancer research: progress and perspectives.

Authors:  Yalan Lei; Rong Tang; Jin Xu; Wei Wang; Bo Zhang; Jiang Liu; Xianjun Yu; Si Shi
Journal:  J Hematol Oncol       Date:  2021-06-09       Impact factor: 17.388

5.  Establishment and Validation of a Genetic Label Associated With M2 Macrophage Infiltration to Predict Survival in Patients With Colon Cancer and to Assist in Immunotherapy.

Authors:  Boyang Xu; Ziqi Peng; Guanyu Yan; Ningning Wang; Moye Chen; Xue Yao; Mingjun Sun; Yue An
Journal:  Front Genet       Date:  2021-09-06       Impact factor: 4.599

6.  Machine Learning analysis of high-grade serous ovarian cancer proteomic dataset reveals novel candidate biomarkers.

Authors:  Federica Farinella; Mario Merone; Luca Bacco; Adriano Capirchio; Massimo Ciccozzi; Daniele Caligiore
Journal:  Sci Rep       Date:  2022-02-23       Impact factor: 4.379

7.  CAF-Associated Paracrine Signaling Worsens Outcome and Potentially Contributes to Chemoresistance in Epithelial Ovarian Cancer.

Authors:  Michael Wessolly; Elena Mairinger; Sabrina Borchert; Agnes Bankfalvi; Pawel Mach; Kurt Werner Schmid; Rainer Kimmig; Paul Buderath; Fabian Dominik Mairinger
Journal:  Front Oncol       Date:  2022-03-03       Impact factor: 6.244

Review 8.  Expanding and Remixing the Metadata Landscape.

Authors:  Ariel A Hippen; Casey S Greene
Journal:  Trends Cancer       Date:  2020-11-20
  8 in total

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