| Literature DB >> 31186010 |
N Kojima1, J C Siebert2, H Maecker3, Y Rosenberg-Hasson3, S R Leon4, S K Vargas4, K A Konda5,4, C F Caceres4, J D Klausner5,6.
Abstract
BACKGROUND: Current syphilis tests cannot distinguish between active and past syphilis among patients with serofast rapid plasma reagin (RPR) titers. We investigated whether cytokine profiles might provide insight in the differentiation of active and treated syphilis.Entities:
Keywords: Cytokine; Cytokines; Syphilis; Treponema pallidum
Mesh:
Substances:
Year: 2019 PMID: 31186010 PMCID: PMC6558693 DOI: 10.1186/s12967-019-1947-7
Source DB: PubMed Journal: J Transl Med ISSN: 1479-5876 Impact factor: 5.531
Fig. 1a Association between directionality of rapid plasma reagin titers and changes in cytokine concentration for MIP1B; b MIG; and c VEGF. Partial F test p-values were 0.001, 0.0026, and 0.011, respectively. Deltas in titer (log2) were derived as e.g. t1 − t0, with infection = y, n based on t1
Cytokine pairs classifying samples with incident syphilis
| Cytokine 1 | Cytokine 2 | Chi squared p-value | Association | Covers | Left-no | Left-yes | Right-no | Right-yes | Rate-left | Rate-right | Rel risk | Odds-left | Odds-right | Odds ratio | 95% CI |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EOTAXIN | RANTES | 0.006 | Pos | 26 | 2 | 9 | 12 | 3 | 0.82 | 0.20 | 4.09 | 4.50 | 0.25 | 18.00 | 2.47, 131.29 |
| IL27 | LEPTIN | 0.009 | Pos | 25 | 2 | 11 | 9 | 3 | 0.85 | 0.25 | 3.38 | 5.50 | 0.33 | 16.50 | 2.25, 121.23 |
| IL1RA | TRAIL | 0.012 | Pos | 37 | 11 | 7 | 3 | 16 | 0.39 | 0.84 | 0.46 | 0.64 | 5.33 | 0.12 | 0.03, 0.57 |
| IL1RA | MIG | 0.028 | Pos | 35 | 11 | 6 | 4 | 14 | 0.35 | 0.78 | 0.45 | 0.55 | 3.50 | 0.16 | 0.04, 0.69 |
| BDNF | MIG | 0.028 | Neg | 25 | 10 | 3 | 3 | 9 | 0.23 | 0.75 | 0.31 | 0.30 | 3.00 | 0.10 | 0.02, 0.63 |
| EOTAXIN | VCAM1 | 0.029 | Pos | 32 | 6 | 12 | 11 | 3 | 0.67 | 0.21 | 3.11 | 2.00 | 0.27 | 7.33 | 1.47, 36.67 |
| FASL | LEPTIN | 0.031 | Pos | 25 | 3 | 11 | 8 | 3 | 0.79 | 0.27 | 2.88 | 3.67 | 0.38 | 9.78 | 1.55, 61.65 |
| LEPTIN | MCP1 | 0.034 | Pos | 23 | 3 | 12 | 6 | 2 | 0.80 | 0.25 | 3.20 | 4.00 | 0.33 | 12.00 | 1.56, 92.29 |
| CD40L | IL22 | 0.037 | Pos | 25 | 7 | 8 | 0 | 10 | 0.53 | 1.00 | 0.53 | 1.13 | 21.00 | 0.05* | 0.003, 1.09 |
| EOTAXIN | VEGFD | 0.038 | Pos | 23 | 1 | 9 | 8 | 5 | 0.90 | 0.38 | 2.34 | 9.00 | 0.63 | 14.40 | 1.38, 150.81 |
| EOTAXIN | SCF | 0.038 | Pos | 29 | 5 | 11 | 10 | 3 | 0.69 | 0.23 | 2.98 | 2.20 | 0.30 | 7.33 | 1.38. 38.88 |
| LEPTIN | TNFB | 0.038 | Pos | 29 | 5 | 11 | 10 | 3 | 0.69 | 0.23 | 2.98 | 2.20 | 0.30 | 7.33 | 1.38. 38.88 |
| ENA78 | MIG | 0.038 | Neg | 24 | 10 | 2 | 4 | 8 | 0.17 | 0.67 | 0.25 | 0.20 | 2.00 | 0.10 | 0.01, 0.69 |
| IL6 | LEPTIN | 0.040 | Pos | 26 | 5 | 10 | 9 | 2 | 0.67 | 0.18 | 3.67 | 2.00 | 0.22 | 9.00 | 1.39, 58.45 |
| LEPTIN | RANTES | 0.041 | Pos | 31 | 3 | 11 | 11 | 6 | 0.79 | 0.35 | 2.23 | 3.67 | 0.55 | 6.72 | 1.33, 33.91 |
| IFNB | TRAIL | 0.041 | Pos | 34 | 11 | 9 | 2 | 12 | 0.45 | 0.86 | 0.53 | 0.82 | 6.00 | 0.14 | 0.02, 0.78 |
| EGF | MIG | 0.041 | Neg | 29 | 12 | 5 | 3 | 9 | 0.29 | 0.75 | 0.39 | 0.42 | 3.00 | 0.14 | 0.03, 0.74 |
| CD40L | TRAIL | 0.044 | Pos | 26 | 8 | 5 | 2 | 11 | 0.38 | 0.85 | 0.45 | 0.63 | 5.50 | 0.11 | 0.02, 0.74 |
| IFNG | IL1RA | 0.045 | Pos | 36 | 9 | 8 | 3 | 16 | 0.47 | 0.84 | 0.56 | 0.89 | 5.33 | 0.17 | 0.04, 0.79 |
| IL12P40 | IL12P70 | 0.048 | Pos | 32 | 9 | 8 | 2 | 13 | 0.47 | 0.87 | 0.54 | 0.89 | 6.50 | 0.14 | 0.02, 0.80 |
* This table lists all pairs of cytokines for which the ratio of uninfected to infected samples is significantly different (Chi square p-value < 0.05) between the most common extreme tertiles [e.g., either low:low vs. high:high (positive association), or low:high vs high:low (negative association)]. The Chi square p-value is also provided, as well as the counts of uninfected (no) and infected (yes) samples in each corner. Corners are referred to as “Left” or “Right”, which generalizes to both positive and negative slopes. Pairs are ordered by p-value. The number of samples contained in the relevant extrema is shown in the “covers” column. This is the sum of the left-no, left-yes, right-no, and right-yes columns. Relative risk and odds ratios are also included. These calculations compare frequencies of incident syphilis in the left corner to those in the right corner. In some cases, the left corner has a higher frequency of incident syphilis than does the right corner, while in other cases the right corner has a higher frequency. These patterns are reflected in the relative risk and odds ratios. Odds ratio for CD40L-IL22 was computed using the Haldane–Anscombe correction to account for a zero in one cell
Fig. 2a Eotaxin and Rantes; b IL27 and Leptin; and c Il1RA and Trail. *The three pairs of cytokines that could best distinguish between people with incident syphilis versus people without syphilis. a The measurements for each cytokine were divided into tertiles, indicated by the light gray lines. Of the diagonally opposing pairs corners, RANTES low:EOTAXIN low (pink) and RANTES high:EOTAXIN high (green) contain more observations than did RANTES low:EOTAXIN high and RANTES high:EOTAXIN low. This lower left-hand corner (pink) contains 2 “no infection” samples and 9 “yes infection” samples. The right-hand corner (green) contains 12 “no infection” values and 3 “yes infection.” This difference is statistically significant, suggesting that samples with RANTES low and EOTAXIN low are more likely to suggest infection, while RANTES high and EOTAXIN high are more likely to suggest no infection. The title provides the Chi square p-value and number of observations in the highlighted corners corners. “No infection” samples are shown as circles while “yes infection” samples are shown as squares. Shading indicates samples from patients who are HIV+. The table on the right side of the graph shows counts of “no” and “yes” samples by corner. Black lines along the axes indicated observed values for that cytokine and represent the distribution of observed values. b Analysis as per A, for LEPTIN and IL27. c Analysis as per A, for TRAIL and ILRA
Fig. 3Cytokine networks identified from significant pairwise relationships among participants with incident syphilis. *Each circle represents a cytokine, and each line the relationship between them. Circle size is proportional to the number of connections
Fig. 4a Heatmap of hierarchical clustering of cytokine networks and participant samples with incident syphilis. Each row is a sample and each column is a cytokine pair. *Purple = correct classification. Blue shading indicates no syphilis while green shading indicates syphilis. b Heatmap of hierarchical clustering of cytokine networks and participants with and without human immunodeficient virus infection. Each row is a participant sample and each column is a cytokine pair. Purple squares indicate that the ratio associated with the cytokine pair correctly classified at least one sample from that participant. *Pink shading represents HIV-infected participants, while gray represents non HIV-infected participants