| Literature DB >> 31182015 |
Junzheng Du1, Shandian Gao2, Zhancheng Tian2, Yanni Guo2, Di Kang2, Shanshan Xing2, Guorui Zhang2, Guangyuan Liu2, Jianxun Luo2, Huiyun Chang2, Hong Yin2,3.
Abstract
BACKGROUND: Bluetongue virus (BTV) causes a disease among wild and domesticated ruminants which is not contagious, but which is transmitted by biting midges of the Culicoides species. BTV can induce an intense cytopathic effect (CPE) in mammalian cells after infection, although Culicoides- or mosquito-derived cell cultures cause non-lytic infection with BTV without CPE. However, little is known about the transcriptome changes in Aedes albopictus cells infected with BTV.Entities:
Keywords: Aedes albopictus cells; Bluetongue virus; Differentially expressed genes; Transcriptome sequencing; Vector–virus interaction
Mesh:
Substances:
Year: 2019 PMID: 31182015 PMCID: PMC6558886 DOI: 10.1186/s12866-019-1498-3
Source DB: PubMed Journal: BMC Microbiol ISSN: 1471-2180 Impact factor: 3.605
Primer sequences for analysis of gene expression using qRT-PCR
| Primer name | Sequence (5′-3′) | Product size (bp) |
|---|---|---|
| AAEL015390-F | AGGCGAAAGCCAAAGCAGTT | 90 |
| AAEL015390-R | TCGTGCGGTTCTTCAGGTGT | |
| AAEL010126 -F | TCCACCTCGTCGTCACCTTG | 131 |
| AAEL010126-R | TGTTCGTCGTAGCTGTCGCT | |
| AAEL009532-F | CTGCTGTTCCACACGCTGAC | 189 |
| AAEL009532-R | TAACCGCGCTCTCCGAATGT | |
| AAEL001603-F | GCTGCCCATCCAGAACAAGC | 163 |
| AAEL001603-R | GGTGCGGCCACTGTATGTTG | |
| AAEL012071-F | GCGCGTCAAAGATGCAGAGG | 166 |
| AAEL012071-R | GAAGGCATCGTCGACTCCCA | |
| AAEL001165-F | ACAGTTCGGCCAACTCGTCA | 149 |
| AAEL001165-R | ACTGGCTGTTGGTGACTGCT | |
| AAEL002903-F | TTTGCGCACCATCCAAGACG | 139 |
| AAEL002903-R | GTGCCCAATGTGCTGGTTGT | |
| AAEL004715-F | CGACGGGTAGCAGTAGCTGT | 150 |
| AAEL004715-R | TGTTGTGCTTGCTCTGCGTT | |
| AAEL010488-F | CCGTCTCCCAGTCACCTGTC | 163 |
| AAEL010488-R | CGTCATCCTGTTGGCTGTGC | |
| β - actin-F | GGAGAAGATCTGGCATCACA | 95 |
| β - actin-R | TGTCATCTTCTCGCGGTTAG |
Fig. 1Confirmation of BTV replication in Aedes albopictus cells. a Immunofluorescence assay (NS1 protein) of BTV-infected cells at 12 and 24 hpi. b Western blot analysis of NS1, NS2, and VP6 in BTV-infected and control samples at 12 and 24 hpi
Fig. 2Classification of raw reads from BTV-infected (a) and uninfected (b) Aedes albopictus cells
Fig. 3Statistical charts of all expressed genes in BTV-infected and uninfected groups. The x and y axes represent the levels of expression of the mRNAs of the two groups. The yellow triangles represent mRNAs up-regulated in BTV-infected cells, and the blue points represent mRNAs down-regulated in BTV-infected cells
Fig. 4GO pathway enrichment analysis of 380 differentially expressed genes based on their functional annotations, including 603 terms for biological processes, 98 for cellular components, and 129 for molecular functions
Fig. 5Interaction network of differentially expressed genes generated using the STRING database. The edges represent predicted functional associations. An edge was drawn with up to seven differently colored lines representing the existence of seven types of evidence used in predicting the associations. The red lines indicate fusion evidence, the green lines indicate neighborhood evidence, the blue lines indicate co-occurrence evidence, the purple lines indicate experimental evidence, the yellow lines indicate textmining evidence, the light-blue lines indicate database evidence, and the black lines indicate co-expression evidence
Fig. 6qRT-PCR validation of nine selected mRNAs. The relative expression level of each mRNA transcript in BTV-infected cells was calculated using the 2—ΔΔCT method and represented as the n-fold change relative to the uninfected cells