Literature DB >> 31179372

The first complete genome sequence of garlic common latent virus occurring in India.

Vineeta Yadav1, Shahana Majumder1.   

Abstract

The complete genome sequence of a garlic common latent virus (GarCLV) isolate collected from NHRDF, Karnal, India was determined. The whole genome of this GarCLV isolate consists of 8573 nucleotides, excluding the 3'-end poly-A tail. The sequence is 91-93% similar to rest of the five whole genome sequences available till date. It contains six open reading frames (ORFs) which encode polypeptide of 219 kDa, 25 kDa, 11 kDa, 7 kDa, 32.74 kDa and 15 kDa from ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 respectively. The phylogenetic study based on coat protein sequence demonstrated high diversity present among Indian population of GarCLV.

Entities:  

Keywords:  Complete genome; Garlic common latent virus; Molecular characterization

Year:  2019        PMID： 31179372      PMCID： PMC6531568          DOI： 10.1007/s13337-018-0505-x

Source DB:  PubMed          Journal:  Virusdisease        ISSN： 2347-3584


  14 in total

Review 1.  Triple gene block: modular design of a multifunctional machine for plant virus movement.

Authors:  Sergey Yu Morozov; Andrey G Solovyev
Journal:  J Gen Virol       Date:  2003-06       Impact factor: 3.891

2.  Complete genome sequence of garlic latent virus, a member of the carlavirus family.

Authors:  Sang Ik Song; Jin Nam Choi; Jong Tae Song; Ji-Hoon Ahn; Jong Seob Lee; Minkyun Kim; Jong-Joo Cheong; Yang Do Choi
Journal:  Mol Cells       Date:  2002-10-31       Impact factor: 5.034

Review 3.  Varied movement strategies employed by triple gene block-encoding viruses.

Authors:  Jeanmarie Verchot-Lubicz; Lesley Torrance; Andrey G Solovyev; Sergey Yu Morozov; Andrew O Jackson; David Gilmer
Journal:  Mol Plant Microbe Interact       Date:  2010-10       Impact factor: 4.171

Review 4.  Plasmodesmata: gateways to local and systemic virus infection.

Authors:  Yoselin Benitez-Alfonso; Christine Faulkner; Christophe Ritzenthaler; Andrew J Maule
Journal:  Mol Plant Microbe Interact       Date:  2010-11       Impact factor: 4.171

5.  Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses.

Authors:  M N Rozanov; E V Koonin; A E Gorbalenya
Journal:  J Gen Virol       Date:  1992-08       Impact factor: 3.891

6.  Triple gene block proteins of white clover mosaic potexvirus are required for transport.

Authors:  D L Beck; P J Guilford; D M Voot; M T Andersen; R L Forster
Journal:  Virology       Date:  1991-08       Impact factor: 3.616

7.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

8.  Diverse suppressors of RNA silencing enhance agroinfection by a viral replicon.

Authors:  Marin Chiba; Jonathan C Reed; Alexey I Prokhnevsky; Elisabeth J Chapman; Munir Mawassi; Eugene V Koonin; James C Carrington; Valerian V Dolja
Journal:  Virology       Date:  2005-11-21       Impact factor: 3.616

9.  The potato virus X TGBp2 protein association with the endoplasmic reticulum plays a role in but is not sufficient for viral cell-to-cell movement.

Authors:  Ruchira Mitra; Konduru Krishnamurthy; Elison Blancaflor; Mark Payton; Richard S Nelson; Jeanmarie Verchot-Lubicz
Journal:  Virology       Date:  2003-07-20       Impact factor: 3.616

10.  Topological properties of the triple gene block protein 2 of Bamboo mosaic virus.

Authors:  Hsiu-Ting Hsu; Yuan-Lin Chou; Yang-Hao Tseng; Yu-Hsing Lin; Tzung-Min Lin; Na-Sheng Lin; Yau-Heiu Hsu; Ban-Yang Chang
Journal:  Virology       Date:  2008-07-18       Impact factor: 3.616
View more
  1 in total

1.  Identification and Characterization of a Garlic Virus E Genome in Garlic (Allium sativum L.) Using High-Throughput Sequencing from India.

Authors:  Malyaj R Prajapati; Aakansha Manav; Jitender Singh; Pankaj Kumar; Amit Kumar; Ravindra Kumar; Satya Prakash; Virendra Kumar Baranwal
Journal:  Plants (Basel)       Date:  2022-01-15
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.