Literature DB >> 31171174

Untargeted analysis of nanoLC-HRMS data by ANOVA-PCA to highlight metabolites in Gammarus fossarum after in vivo exposure to pharmaceuticals.

C Bonnefoy1, A Fildier2, A Buleté2, C Bordes2, J Garric3, E Vulliet2.   

Abstract

In Western Europe, river water quality can be assessed using sentinel species such as the amphipod Gammarus fossarum. In this work of environmental metabolomics, the objective was to develop suitable chemometrics methods, using a limited number of individuals, to assess the modification of the metabolism of G. fossarum exposed to two human pharmaceuticals. Males and females gammarids were exposed to a mixture of the anxiolytic oxazepam and the antiepileptic carbamazepine (1000 ng L-1) for 14 days under laboratory conditions according to a full factorial design 2² (repeated 5 times). They were analyzed at the single individual scale using a method including a μQuEChERS type extraction followed by a nanoliquid chromatography analysis coupled to high-resolution mass spectrometry. The molecular fingerprints obtained were investigated using XCMS. Several corrections of experimental drifts (by using lock mass and Quality Control samples) were tested prior to using APCA + method for the exploitation of the unbalanced designed data. Signal reproducibility was greatly improved by the lock mass normalisation. From the experimental design, a significant effect of both experimental factors "exposure to the mixture" and "gammarid gender" on the signals measured were highlighted by APCA+. Finally, the results obtained made it possible to identify variables responsible for each of the factor effects.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  APCA; Designed experiments data; Environmental untargeted metabolomics; Invertebrates; Lock mass normalisation; NanoLC-HRMS

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Year:  2019        PMID: 31171174     DOI: 10.1016/j.talanta.2019.04.028

Source DB:  PubMed          Journal:  Talanta        ISSN: 0039-9140            Impact factor:   6.057


  2 in total

Review 1.  Nano-liquid chromatography-mass spectrometry and recent applications in omics investigations.

Authors:  Katherine L Sanders; James L Edwards
Journal:  Anal Methods       Date:  2020-09-09       Impact factor: 2.896

2.  An optimized LC-HRMS untargeted metabolomics workflow for multi-matrices investigations in the three-spined stickleback.

Authors:  Emmanuelle Lebeau-Roche; Gaëlle Daniele; Aurélie Fildier; Cyril Turies; Odile Dedourge-Geffard; Jean-Marc Porcher; Alain Geffard; Emmanuelle Vulliet
Journal:  PLoS One       Date:  2021-11-29       Impact factor: 3.240

  2 in total

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