Literature DB >> 31160700

Truncating SLC12A6 variants cause different clinical phenotypes in humans and dogs.

Mario Van Poucke1, Kimberley Stee2, Laurien Sonck3, Emmelie Stock4, Leslie Bosseler5, Jo Van Dorpe6, Filip Van Nieuwerburgh7, Dieter Deforce7, Luc J Peelman8, Luc Van Ham2, Sofie F M Bhatti2, Bart J G Broeckx8.   

Abstract

Clinical, pathological, and genetic findings of a primary hereditary ataxia found in a Malinois dog family are described and compared with its human counterpart. Based on the family history and the phenotype/genotype relationships already described in humans and dogs, a causal variant was expected to be found in KCNJ10. Rather surprisingly, whole-exome sequencing identified the SLC12A6 NC_006612.3(XM_014109414.2): c.178_181delinsCATCTCACTCAT (p.(Met60Hisfs*14)) truncating variant. This loss-of-function variant perfectly segregated within the affected Malinois family in an autosomal recessive way and was not found in 562 additional reference dogs from 18 different breeds, including Malinois. In humans, SLC12A6 variants cause "agenesis of the corpus callosum with peripheral neuropathy" (ACCPN, alias Andermann syndrome), owing to a dysfunction of this K+-Cl- cotransporter. However, depending on the variant (including truncating variants), different clinical features are observed within ACCPN. The variant in dogs encodes the shortest isoform described so far and its resultant phenotype is quite different from humans, as no signs of peripheral neuropathy, agenesis of the corpus callosum nor obvious mental retardation have been observed in dogs. On the other hand, progressive spinocerebellar ataxia, which is the most important feature of the canine phenotype, hindlimb paresis, and myokymia-like muscle contractions have not been described in humans with ACCPN so far. As this is the first report of a naturally occurring disease-causing SLC12A6 variant in a non-human species, the canine model will be highly valuable to better understand the complex molecular pathophysiology of SLC12A6-related neurological disorders and to evaluate novel treatment strategies.

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Year:  2019        PMID: 31160700      PMCID: PMC6777613          DOI: 10.1038/s41431-019-0432-3

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  37 in total

1.  Cloning and characterization of KCC3 and KCC4, new members of the cation-chloride cotransporter gene family.

Authors:  D B Mount; A Mercado; L Song; J Xu; A L George; E Delpire; G Gamba
Journal:  J Biol Chem       Date:  1999-06-04       Impact factor: 5.157

2.  Protter: interactive protein feature visualization and integration with experimental proteomic data.

Authors:  Ulrich Omasits; Christian H Ahrens; Sebastian Müller; Bernd Wollscheid
Journal:  Bioinformatics       Date:  2013-10-24       Impact factor: 6.937

3.  From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.

Authors:  Geraldine A Van der Auwera; Mauricio O Carneiro; Christopher Hartl; Ryan Poplin; Guillermo Del Angel; Ami Levy-Moonshine; Tadeusz Jordan; Khalid Shakir; David Roazen; Joel Thibault; Eric Banks; Kiran V Garimella; David Altshuler; Stacey Gabriel; Mark A DePristo
Journal:  Curr Protoc Bioinformatics       Date:  2013

4.  Transit defect of potassium-chloride Co-transporter 3 is a major pathogenic mechanism in hereditary motor and sensory neuropathy with agenesis of the corpus callosum.

Authors:  Adèle Salin-Cantegrel; Jean-Baptiste Rivière; Masoud Shekarabi; Sarah Rasheed; Sandra Dacal; Janet Laganière; Rébecca Gaudet; Daniel Rochefort; Gaëtan Lesca; Claudia Gaspar; Patrick A Dion; Jean-Yves Lapointe; Guy A Rouleau
Journal:  J Biol Chem       Date:  2011-05-31       Impact factor: 5.157

5.  The variant call format and VCFtools.

Authors:  Petr Danecek; Adam Auton; Goncalo Abecasis; Cornelis A Albers; Eric Banks; Mark A DePristo; Robert E Handsaker; Gerton Lunter; Gabor T Marth; Stephen T Sherry; Gilean McVean; Richard Durbin
Journal:  Bioinformatics       Date:  2011-06-07       Impact factor: 6.937

6.  Canine models of human rare disorders.

Authors:  Marjo K Hytönen; Hannes Lohi
Journal:  Rare Dis       Date:  2016-09-28

7.  Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes.

Authors:  Bart J G Broeckx; Christophe Hitte; Frank Coopman; Geert E C Verhoeven; Sarah De Keulenaer; Ellen De Meester; Thomas Derrien; Jessica Alfoldi; Kerstin Lindblad-Toh; Tim Bosmans; Ingrid Gielen; Henri Van Bree; Bernadette Van Ryssen; Jimmy H Saunders; Filip Van Nieuwerburgh; Dieter Deforce
Journal:  Sci Rep       Date:  2015-08-03       Impact factor: 4.379

8.  A homozygous KCNJ10 mutation in Jack Russell Terriers and related breeds with spinocerebellar ataxia with myokymia, seizures, or both.

Authors:  D Gilliam; D P O'Brien; J R Coates; G S Johnson; G C Johnson; T Mhlanga-Mutangadura; L Hansen; J F Taylor; R D Schnabel
Journal:  J Vet Intern Med       Date:  2014-04-07       Impact factor: 3.333

9.  Genes and genetic testing in hereditary ataxias.

Authors:  Erin Sandford; Margit Burmeister
Journal:  Genes (Basel)       Date:  2014-07-22       Impact factor: 4.096

10.  The Ensembl Variant Effect Predictor.

Authors:  William McLaren; Laurent Gil; Sarah E Hunt; Harpreet Singh Riat; Graham R S Ritchie; Anja Thormann; Paul Flicek; Fiona Cunningham
Journal:  Genome Biol       Date:  2016-06-06       Impact factor: 13.583

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  2 in total

1.  Characterisation of canine KCNIP4: A novel gene for cerebellar ataxia identified by whole-genome sequencing two affected Norwegian Buhund dogs.

Authors:  Christopher A Jenkins; Lajos Kalmar; Kaspar Matiasek; Lorenzo Mari; Kaisa Kyöstilä; Hannes Lohi; Ellen C Schofield; Cathryn S Mellersh; Luisa De Risio; Sally L Ricketts
Journal:  PLoS Genet       Date:  2020-01-30       Impact factor: 5.917

Review 2.  Physiological Processes Modulated by the Chloride-Sensitive WNK-SPAK/OSR1 Kinase Signaling Pathway and the Cation-Coupled Chloride Cotransporters.

Authors:  Adrián Rafael Murillo-de-Ozores; María Chávez-Canales; Paola de Los Heros; Gerardo Gamba; María Castañeda-Bueno
Journal:  Front Physiol       Date:  2020-10-20       Impact factor: 4.566

  2 in total

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