| Literature DB >> 31160486 |
Han Shi1, Hongyan He2, Suvash Chandra Ojha1, Changfeng Sun1, Juan Fu1, Mao Yan1, Cunliang Deng1, Yunjian Sheng3.
Abstract
Background: It has been reported that polymorphisms of signal transducer and activator of transcription (STAT) 3 and STAT4 might be associated with susceptibility to hepatitis B virus (HBV) infection and risk of chronic hepatocellular carcinoma (HCC). Owing to limitation of sample size and inconclusive results, we conducted a meta-analysis to clarify the association.Entities:
Keywords: HBV; HCC; Meta-analysis; STAT3; STAT4; single nucleotide polymorphisms
Year: 2019 PMID: 31160486 PMCID: PMC6616055 DOI: 10.1042/BSR20190783
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.840
Figure 1Chart of the literature search and selection process
Characteristics of studies included in the meta-analysis
| SNP | Author | Year | Country | Ethnicity | HWE | CHB | HCC | HC | NC | Scores | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene type ( | ||||||||||||||||||
| TT | TC | CC | TT | TC | CC | TT | TC | CC | TT | TC | CC | |||||||
| Xie et al. [ | 2013 | China | Han | Y | 385 | 451 | 130 | 411 | 458 | 140 | 453 | 400 | 142 | / | / | / | 14 | |
| Chanthra et al. [ | 2015 | Thailand | Thai | Y | 73 | 127 | 33 | 55 | 107 | 49 | 77 | 99 | 30 | / | / | / | 13 | |
| Fatemipour et al. [ | 2016 | Iran | Iran | N | 20 | 8 | 22 | 10 | 18 | 5 | 32 | 4 | 14 | / | / | / | 6 | |
| Li et al. [ | 2018 | China | Han | Y | 108 | 103 | 28 | 82 | 82 | 23 | 88 | 76 | 5 | 42 | 42 | 14 | 13 | |
| GG | GC | CC | GG | GC | CC | GG | GC | CC | GG | GC | CC | |||||||
| Xie et al. [ | 2013 | China | Han | Y | 198 | 466 | 245 | 252 | 496 | 265 | 215 | 500 | 294 | / | / | / | 14 | |
| Chanthra et al. [ | 2015 | Thailand | Thai | Y | 60 | 95 | 45 | 56 | 97 | 39 | 53 | 95 | 42 | / | / | / | 13 | |
| GG | GT | TT | GG | GT | TT | GG | GT | TT | GG | GT | TT | |||||||
| Chen et al. [ | 2013 | China | Han | Y | 370 | 327 | 75 | 249 | 217 | 35 | / | / | / | / | / | / | 13 | |
| Clark et al. [ | 2013 | Vietnam | Vietnamese | Y | 86 | 92 | 28 | 117 | 107 | 20 | / | / | / | / | / | / | 12 | |
| Kim et al. [ | 2014 | Korea | Korean | Y | 334 | 261 | 63 | 160 | 103 | 20 | 1293 | 1251 | 306 | / | / | / | 11 | |
| Liao et al. [ | 2014 | China | Han | Y | 190 | 204 | 46 | 104 | 93 | 25 | 97 | 113 | 27 | 181 | 157 | 53 | 14 | |
| Liao et al. [ | 2015 | China | Tibetans | Y | 194 | 189 | / | / | / | / | / | / | 209 | 268 | 14 | |||
| 2015 | China | Uygurs | Y | 103 | 95 | / | / | / | / | / | / | 91 | 119 | 14 | ||||
| Chanthra et al. [ | 2015 | Thailand | Thai | Y | 83 | 93 | 24 | 87 | 86 | 19 | 62 | 100 | 28 | / | / | / | 13 | |
| Chen et al. [ | 2015 | China | Han | Y | / | / | / | 257 | 211 | 40 | 1298 | 1333 | 343 | / | / | / | 11 | |
| Lu et al. [ | 2015 | China | Han | Y | 77 | 95 | 15 | 45 | 30 | 3 | / | / | / | 114 | 132 | 37 | 10 | |
| El Sharkawy et al. [ | 2018 | Sydney | Caucasian | Y | 546 | 252 | 32 | / | / | / | 147 | 93 | 15 | / | / | / | 13 | |
Abbreviations: HC, healthy control; NC, natural clearance subject.
Figure 2Forest plot of allele comparison of STAT3 rs1053004 for CHB susceptibility and CHB-related HCC risk
Figure 3TSA for STAT polymorphism under the allele contrast model
(A) Chronic HBV infection susceptibility in STAT3 rs1053004. (B) Risk of CHB-related HCC in STAT3 rs1053004. (C) Chronic HBV infection susceptibility in STAT4 rs7574865. (D) Risk of CHB-related HCC in STAT4 rs7574865.
Figure 4Forest plot of allele comparison of STAT4 rs7574865
For CHB susceptibility and CHB-related HCC risk.
FPRP values for associations between STAT3, STAT4 polymorphism and chronic HBV infection
| SNP | Genetic model | OR | 95% CI | Power | Prior probability | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.25 | 0.1 | 0.01 | 0.001 | 0.0001 | |||||||
| Overall | Allelic effect (C vs. T) | 1.17 | 1.07–1.29 | 0.001623 | 1.000 | 0.005 | 0.014 | 0.138 | 0.619 | 0.942 | |
| Dominant effect (CC+TC vs. TT) | 1.38 | 1.09–1.76 | 0.009448 | 0.749 | 0.036 | 0.102 | 0.555 | 0.926 | 0.992 | ||
| Recessive effect (CC vs. TC+TT) | 1.10 | 0.91–1.31 | 0.284978 | 1.000 | 0.461 | 0.72 | 0.966 | 0.997 | 1.000 | ||
| Southeast Asian | Allelic effect (C vs. T) | 1.15 | 1.05–1.27 | 0.005782 | 1.000 | 0.017 | 0.049 | 0.364 | 0.852 | 0.983 | |
| Dominant effect (CC+TC vs. TT) | 1.26 | 1.11–1.43 | 0.000345 | 0.997 | 0.001 | 0.003 | 0.033 | 0.257 | 0.776 | ||
| Recessive effect (CC vs. TC+TT) | 1.23 | 0.85–1.77 | 0.264937 | 0.857 | 0.481 | 0.736 | 0.968 | 0.997 | 1.000 | ||
| Overall | Allelic effect (G vs. C) | 1.09 | 0.99–1.20 | 0.078947 | 1.000 | 0.191 | 0.415 | 0.887 | 0.987 | 0.999 | |
| Dominant effect (GG+GC vs. CC) | 1.12 | 0.96–1.32 | 0.176402 | 1.000 | 0.346 | 0.614 | 0.946 | 0.994 | 0.999 | ||
| Recessive effect (GG vs. GC+CC) | 1.12 | 0.95–1.32 | 0.176402 | 1.000 | 0.346 | 0.614 | 0.946 | 0.994 | 0.999 | ||
| Overall | Allelic effect (G vs. T) | 1.23 | 1.15–1.32 | 0.000000 | 1.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | |
| Dominant effect (GG+GT vs. TT) | 1.38 | 1.18–1.61 | 0.000042 | 0.855 | 0.000 | 0.000 | 0.005 | 0.047 | 0.330 | ||
| Recessive effect (GG vs. GT+TT) | 1.29 | 1.19–1.41 | 0.000000 | 1.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | ||
| Asian | Allelic effect (G vs. T) | 1.22 | 1.14–1.32 | 0.000001 | 1.000 | 0.000 | 0.000 | 0.000 | 0.001 | 0.007 | |
| Dominant effect (GG+GT vs. TT) | 1.36 | 1.16–1.60 | 0.000209 | 0.881 | 0.001 | 0.002 | 0.023 | 0.191 | 0.703 | ||
| Recessive effect (GG vs. GT+TT) | 1.28 | 1.18–1.40 | 0.000000 | 1.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 | ||
Abbreviations; CI, confidence interval; OR, odds ratio.
P, Chi-square test was adopted to calculate the genotype frequency distributions.
Power, Statistical power was calculated using the number of observations in the subgroup and the OR and P values in this table.
FPRP values for associations between STAT3, STAT4 polymorphism and CHB-related HCC risk
| SNP | Genetic model | OR | 95% CI | Power | Prior probability | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.25 | 0.1 | 0.01 | 0.001 | 0.0001 | |||||||
| Overall | Allelic effect (C vs. T) | 1.04 | 0.93–1.15 | 0.444517 | 1.000 | 0.571 | 0.800 | 0.978 | 0.998 | 1.000 | |
| Dominant effect (CC+TC vs. TT) | 1.03 | 0.89–1.19 | 0.688252 | 1.000 | 0.674 | 0.861 | 0,986 | 0.999 | 1.000 | ||
| Recessive effect (CC vs. TC+TT) | 0.98 | 0.58–1.67 | 0.940781 | 0.922 | 0.754 | 0.902 | 0.990 | 0.999 | 1.000 | ||
| Southeast Asian | Allelic effect (C vs. T) | 1.05 | 0.94–1.17 | 0.376856 | 1.000 | 0.531 | 0.772 | 0.974 | 0.997 | 1.000 | |
| Dominant effect (CC+TC vs. TT) | 1.02 | 0.87–1.18 | 0.789955 | 1.000 | 0.703 | 0.877 | 0.987 | 0.999 | 1.000 | ||
| Recessive effect (CC vs. TC+TT) | 1.16 | 0.94–1.43 | 0.164472 | 0.992 | 0.332 | 0.599 | 0.943 | 0.994 | 0.999 | ||
| Overall | Allelic effect (G vs. C) | 1.07 | 0.95–1.20 | 0.247465 | 1.000 | 0.426 | 0.690 | 0.961 | 0.996 | 1.000 | |
| Dominant effect (GG+GC vs. CC) | 1.06 | 0.88–1.27 | 0.527480 | 1.000 | 0.613 | 0.826 | 0.981 | 0.998 | 1.000 | ||
| Recessive effect (GG vs. GC+CC) | 1.14 | 0.94–1.38 | 0.178886 | 0.998 | 0.350 | 0.617 | 0.947 | 0.994 | 0.999 | ||
| Overall | Allelic effect (G vs. T) | 1.18 | 1.07–1.31 | 0.001909 | 1.000 | 0.006 | 0.017 | 0.159 | 0.656 | 0.950 | |
| Dominant effect (GG+GT vs. TT)) | 1.26 | 1.04–1.53 | 0.019645 | 0.961 | 0.058 | 0.155 | 0.669 | 0.953 | 0.995 | ||
| Recessive effect (GG vs. GT+TT) | 1.20 | 1.06–1.37 | 0.006992 | 1.000 | 0.021 | 0.059 | 0.409 | 0.875 | 0.986 | ||
Abbreviations; CI, confidence interval; OR, odds ratio.
P, Chi-square test was adopted to calculate the genotype frequency distributions.
Power, Statistical power was calculated using the number of observations in the subgroup and the OR and P values in this table.
Figure 5Begg’s funnel plot to detect publication bias analysis for STAT4 rs7574865 polymorphism under the recessive contrast model
Meta-analysis of the association between STAT3 polymorphisms and chronic HBV infection and CHB-related HCC risk
| Case/control | SNP | Included studies | Genetic model | OR | 95% CI | Z | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| CHB vs. HC+NC | rs1053004 (T>C) | Overall | 4 | Allelic effect (C vs. T) | 1.17 | 1.07–1.29 | 48 | 0.13 | 3.39 | 0.0007 |
| 4 | Dominant effect (CC+TC vs. TT) | 1.38 | 1.09–1.76 | 56 | 0.08 | 2.63 | 0.008 | |||
| 4 | Recessive effect (CC vs. TC+TT) | 1.1 | 0.91–1.31 | 44 | 0.15 | 0.99 | 0.32 | |||
| Southeast Asian | 3 | Allelic effect (C vs. T) | 1.15 | 1.05–1.27 | 0 | 0.43 | 2.98 | 0.003 | ||
| 3 | Dominant effect (CC+TC vs. TT) | 1.26 | 1.11–1.43 | 0 | 0.61 | 3.49 | 0.0005 | |||
| 3 | Recessive effect (CC vs. TC+TT) | 1.23 | 0.85–1.77 | 62 | 0.07 | 1.08 | 0.28 | |||
| rs2293152 (C>G) | Overall | 2 | Allelic effect (G vs. C) | 1.09 | 0.99–1.20 | 0 | 0.73 | 1.72 | 0.08 | |
| 2 | Dominant effect (GG+GC vs. CC) | 1.12 | 0.96–1.32 | 0 | 0.7 | 1.46 | 0.14 | |||
| 2 | Recessive effect (GG vs. GC+CC) | 1.12 | 0.95–1.32 | 0 | 0.86 | 1,35 | 0.18 | |||
| CHB related HCC vs. CHB without HCC | rs1053004 (T>C) | Overall | 4 | Allelic effect (C vs. T) | 1.04 | 0.93–1.15 | 48 | 0.12 | 0.64 | 0.52 |
| 4 | Dominant effect (CC+TC vs. TT) | 1.03 | 0.89–1.19 | 0 | 0.49 | 0.37 | 0.71 | |||
| 4 | Recessive effect (CC vs. TC+TT) | 0.98 | 0.58–1.67 | 76 | 0.006 | 0.06 | 0.95 | |||
| Southeast Asian | 3 | Allelic effect (C vs. T) | 1.05 | 0.94–1.17 | 50 | 0.14 | 0.86 | 0.39 | ||
| 3 | Dominant effect (CC+TC vs. TT) | 1.02 | 0.87–1.18 | 0 | 0.43 | 0.22 | 0.82 | |||
| 3 | Recessive effect (CC vs. TC+TT) | 1.16 | 0.94–1.43 | 53 | 0.12 | 1.37 | 0.17 | |||
| rs2293152 (C>G) | Overall | 2 | Allelic effect (G vs. C) | 1.07 | 0.95–1.20 | 0 | 0.75 | 1.18 | 0.24 | |
| 2 | Dominant effect (GG+GC vs. CC) | 1.06 | 0.88–1.27 | 0 | 0.74 | 0.57 | 0.57 | |||
| 2 | Recessive effect (GG vs. GC+CC) | 1.14 | 0.94–1.38 | 0 | 0.39 | 1.36 | 0.17 | |||
Abbreviations: PH, P-value of heterogeneity; PA, adjusted
P-value (PA<0.05 means statistically significant).
Meta-analysis of the association between STAT4 polymorphisms and chronic HBV infection and CHB-related HCC risk
| Case/Control | SNP | Included studies | Genetic model | OR | 95% CI | Z | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| CHB vs. HC | rs7574865 (G>T) | Overall | 6 | Allelic effect (G vs T) | 1.23 | 1.15–1.32 | 8 | 0.37 | 5.97 | <0.00001 |
| 6 | Dominant effect (GG+GT vs TT) | 1.38 | 1.18–1.61 | 0 | 0.61 | 4.04 | <0.0001 | |||
| 8 | Recessive effect (GG vs GT+TT) | 1.29 | 1.19–1.41 | 0 | 0.43 | 6,04 | <0.00001 | |||
| Asian | 5 | Allelic effect (G vs T) | 1.22 | 1.14–1.32 | 17 | 0.31 | 5.5 | <0.00001 | ||
| 5 | Dominant effect (GG+GT vs TT) | 1.36 | 1.16–1.60 | 0 | 0.51 | 3.81 | 0.0001 | |||
| 7 | Recessive effect (GG vs GT+TT) | 1.28 | 1.18–1.40 | 9 | 0.36 | 5.6 | <0.00001 | |||
| CHB related HCC vs. CHB without HCC | rs7574865 (G>T) | Overall | 6 | Allelic effect (G vs T) | 1.18 | 1.07–1.31 | 0 | 0.51 | 3.26 | 0.001 |
| 6 | Dominant effect (GG+GT vs TT) | 1.26 | 1.04–1.53 | 0 | 0.56 | 2.31 | 0.02 | |||
| 6 | Recessive effect (GG vs GT+TT) | 1.2 | 1.06–1.37 | 0 | 0.49 | 2.78 | 0.005 | |||
Abbreviations: PA, adjusted; PH, P-value of heterogeneity.
P-value (PA<0.05 means statistically significant).
Score of quality assessment