Literature DB >> 31158512

Ontology mapping for semantically enabled applications.

Ian Harrow1, Rama Balakrishnan2, Ernesto Jimenez-Ruiz3, Simon Jupp4, Jane Lomax5, Jane Reed6, Martin Romacker7, Christian Senger8, Andrea Splendiani9, Jabe Wilson10, Peter Woollard11.   

Abstract

In this review, we provide a summary of recent progress in ontology mapping (OM) at a crucial time when biomedical research is under a deluge of an increasing amount and variety of data. This is particularly important for realising the full potential of semantically enabled or enriched applications and for meaningful insights, such as drug discovery, using machine-learning technologies. We discuss challenges and solutions for better ontology mappings, as well as how to select ontologies before their application. In addition, we describe tools and algorithms for ontology mapping, including evaluation of tool capability and quality of mappings. Finally, we outline the requirements for an ontology mapping service (OMS) and the progress being made towards implementation of such sustainable services.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

Mesh:

Year:  2019        PMID: 31158512     DOI: 10.1016/j.drudis.2019.05.020

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  4 in total

Review 1.  Making the collective knowledge of chemistry open and machine actionable.

Authors:  Kevin Maik Jablonka; Luc Patiny; Berend Smit
Journal:  Nat Chem       Date:  2022-04-04       Impact factor: 24.427

2.  Performance assessment of ontology matching systems for FAIR data.

Authors:  Philip van Damme; Jesualdo Tomás Fernández-Breis; Nirupama Benis; Jose Antonio Miñarro-Gimenez; Nicolette F de Keizer; Ronald Cornet
Journal:  J Biomed Semantics       Date:  2022-07-15

3.  The Presentation, Pace, and Profile of Infection and Sepsis Patients Hospitalized Through the Emergency Department: An Exploratory Analysis.

Authors:  Vincent X Liu; Meghana Bhimarao; John D Greene; Raj N Manickam; Adriana Martinez; Alejandro Schuler; Fernando Barreda; Gabriel J Escobar
Journal:  Crit Care Explor       Date:  2021-02-24

4.  Outlier concepts auditing methodology for a large family of biomedical ontologies.

Authors:  Ling Zheng; Hua Min; Yan Chen; Vipina Keloth; James Geller; Yehoshua Perl; George Hripcsak
Journal:  BMC Med Inform Decis Mak       Date:  2020-12-15       Impact factor: 2.796

  4 in total

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