| Literature DB >> 31156531 |
Guglielmo Lucchese1,2, Agnes Flöel1, Benjamin Stahl1,3,4,5.
Abstract
The relevance of infections as risk factor for cerebrovascular disease is being increasingly recognized. Nonetheless, the pathogenic link between the two entities remains poorly understood. Consistent with recent advances in medicine, the present work addresses the hypothesis that infection-induced immune responses may affect human proteins associated with stroke. Applying established procedures in bioinformatics, the pathogen antigens and the human proteins were searched for common sequences using pentapeptides as probes. The resulting data demonstrate massive peptide sharing between infectious pathogens-such as Chlamydia pneumoniae, Streptococcus pneumoniae, Tannerella forsythia, Haemophilus influenzae, Influenza A virus, and Cytomegalovirus-and human proteins related to risk of ischemic and hemorrhagic stroke. Moreover, the shared peptides are also evident in a number of epitopes experimentally proven immunopositive in the human host. The present findings suggest cross-reactivity as a potential mechanistic link between infections and stroke.Entities:
Keywords: cross-reactivity; infections; inflammation; peptides; stroke
Year: 2019 PMID: 31156531 PMCID: PMC6528689 DOI: 10.3389/fneur.2019.00469
Source DB: PubMed Journal: Front Neurol ISSN: 1664-2295 Impact factor: 4.003
Peptide sharing between pathogen antigens and human proteins that have been associated with stroke.
| ITNYL | |
| CCM2. Cerebral cavernous malformations 2 protein | |
| CCM2L. Cerebral cavernous malformations 2 protein-like | |
| ASSVD; LEHNQ | CSF1R. Macrophage colony-stimulating factor 1 receptor |
| IALHL | |
| SEGKT | FA5. Coagulation factor V |
| PTTGI | GNAQ. Guanine nucleotide-binding protein G(q) subunit alpha |
| EGPCG | HTRA1. Serine protease HTRA1 |
| NTTAE | KCNE2. Potassium voltage-gated channel subfamily E member 2 |
| GFRCL; LRSSA | NOTC3. Neurogenic locus notch homolog protein 3 |
| VSAAG | |
| SGLGG | PAWR. PRKC apoptosis WT1 regulator protein |
| SGNQV | PDE4D. cAMP-specific 3′,5′-cyclic phosphodiesterase 4D |
| GYFAS | |
| DSPRT; SPRTP | SAMH1. Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 |
| LAMIY | |
| TVAPL; VAPLL | KCNA5. Potassium voltage-gated channel subfamily A member 5 |
| AQNGK | KLOT. Klotho |
| SASGS | LMNA. Prelamin-A/C |
| LVLAV | NMDE2. Glutamate receptor ionotropic, NMDA 2B |
| IQTLT | NU5M. NADH-ubiquinone oxidoreductase chain 5 |
| AWTAR; SGTKT | A4. Amyloid-beta A4 protein |
| GLTTI; LTITN | |
| TLSAL | BI1. Bax inhibitor 1 |
| APGRA | CO4A2. Collagen alpha-2(IV) chain |
| GKKAV | COQ8A. Atypical kinase COQ8A, mitochondrial |
| IIFVS | CXA5. Gap junction alpha-5 protein |
| NCGAL | GATA5. Transcription factor GATA-5 |
| HSLQS | GATA6. Transcription factor GATA-6 |
| LGATA; GATAQ | IL4. Interleukin-4 |
| DALTT | ITIH4. Inter-alpha-trypsin inhibitor heavy chain H4 |
| AGGAL; VTTIG | KCNQ1. Potassium voltage-gated channel subfamily KQT member 1 |
| TAPDA | KRIT1. Krev interaction trapped protein 1 |
| EGFAL | LYAM3. P-selectin |
| VTQNP | NMDE2. Glutamate receptor ionotropic, NMDA 2B |
| DGVNT; SGTTG | NOTC3. Neurogenic locus notch homolog protein 3 |
| GLFLL | SCN4B. Sodium channel subunit beta-4 |
| TLPNS | SCN5A. Sodium channel protein type 5 subunit alpha |
| TLPDG; VTLPN | SYLM. Probable leucine—tRNA ligase, mitochondrial |
| LPDAL; LTLSA; SGLTS; TLPDA | |
| TSNFP; GIDIS | ABCC9. ATP-binding cassette sub-family C member 9 |
| LLLPL | ACE. Angiotensin-converting enzyme |
| SFLLL; TTTVS | ANF. Natriuretic peptides A |
| AQPAF | CSF1R. Macrophage colony-stimulating factor 1 receptor |
| ILVAD | ENPP4. Bis(5′-adenosyl)-triphosphatase ENPP4 |
| GATA6. Transcription factor GATA-6 | |
| GNLII | ITIH4. Inter-alpha-trypsin inhibitor heavy chain H4 |
| PGANG; SGSRG | KCNA5. Potassium voltage-gated channel subfamily A member 5 |
| APDYS; PDYSK; DYSKI; TYTPG | KRIT1. Krev interaction trapped protein 1 |
| SNVGG; SPSVP | NU155. Nuclear pore complex protein Nup155 |
| PDE3A. cGMP-inhibited 3′,5′-cyclic phosphodiesterase A | |
| LLPLS; | RN213. E3 ubiquitin-protein ligase RNF213 |
| GPIKS | SCN5A. Sodium channel protein type 5 subunit alpha |
| KKSFL | SYLM. Probable leucine–tRNA ligase, mitochondrial |
| DGVKL | ADA2. Adenosine deaminase 2 |
| LLVSL | ATP6. ATP synthase subunit a |
| ENAYV | |
| ASSLV | PDE3A. cGMP-inhibited 3′,5′-cyclic phosphodiesterase A |
| TVLEK; YVSVV; QTPLG; FLDIW | |
| TSNAS | NMDE2. Glutamate receptor ionotropic, NMDA 2B |
| CALAA | GAS6. Growth arrest-specific protein 6 |
| LLVLL;YAADQ; KVDGV | KLOT. Klotho |
| EELRE | LMNA. Prelamin-A/C |
| YSEES | |
| LLAIV | AL5AP. Arachidonate 5-lipoxygenase-activating protein |
| AQDIL; ISGVK | PDE4D. cAMP-specific 3′,5′-cyclic phosphodiesterase 4D |
| CYTC. Cystatin-C | |
| QRLVP; | |
| ILEKT; LKHLL; | |
| EGGWQ | KLOT. Klotho |
| NU5M. NADH-ubiquinone oxidoreductase chain 5 | |
| KIVLL; LVLAT | |
| ARLNR; SIYST | KCNQ1. Potassium voltage-gated channel subfamily KQT member 1 |
| SCN1B. Sodium channel subunit beta-1 | |
| VPEWS | TBX5. T-box transcription factor TBX5 |
| SVAGW | S19A2. Thiamine transporter 1 |
| GATA5. Transcription factor GATA-5 | |
| GGSNA; | |
| INSNG | SAMH1. Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 |
| KITYG | MYL4. Myosin light chain 4 |
| LLGDP | KCNA5. Potassium voltage-gated channel subfamily A member 5 |
| ISFAI | HTRA1. Serine protease HTRA1 |
| VLNVT | SCN3B. Sodium channel subunit beta-3 |
References in .
Viral/bacterial antigens are described under Methods. Further details at .
Multiple occurrences in bold.
Human proteins given as UniProt entry and name. Further details at .
Epitopes immunopositive in the human host and containing peptide sequences common to antigens from stroke-related pathogens and human proteins associated with stroke.
| 58129 | SGLTSlf | 459109 | sLLPLShlv | 554097 | lvesyTLPDGrii | 634993 | mplhVAPLLaa |
| 66225 | tSGLTSl | 466105 | gtdpLVLAV | 554098 | lvesyTLPDGriikv | 637221 | slsdLLVSL |
| 66817 | ttSGLTS | 467909 | LLLPLnlev | 554195 | mfehlINSNGikpv | 638032 | tpLLLPLaa |
| 69631 | vLLVSLgai | 471133 | SPRTPppltv | 555093 | qgDGVKLhlkakaev | 638320 | vhEGPCGisy |
| 79809 | ELLVLLenertld | 471667 | tlAELLVLL | 555672 | rlsrlqekEELRE | 642301 | eqklnrypASSLVvvr |
| 113324 | dgFLDIWtynAELLV | 475091 | aekeNTTAEl | 557456 | vlvesyTLPDGrii | 642391 | etpvyLGATAgmrll |
| 113533 | idlwsynAELLVal | 476155 | ASSLVdtpk | 559587 | gnENAYVkngklhls | 644577 | iekdlilLGATAvedrl |
| 143137 | tSASGSgedaidesg | 476488 | avdDGVNTf | 563134 | evAELLVkh | 644669 | iifgASSVDf |
| 150977 | eeaklnreeiDGVKL | 478710 | GLTTIlknv | 570114 | AELLVshga | 645002 | inhvvSVAGWgisd |
| 151075 | ynAELLVLLenertl | 482488 | neILVADty | 571918 | EELRElaesw | 645986 | kpTLSALpsplvtsg |
| 151076 | ypgdfidyEELREql | 482780 | nrypASSLV | 573110 | haCALAAslw | 648442 | qgkdlqqYVSVVvld |
| 163409 | setdaLRSSA | 482921 | pkyvksnrLVLATg | 574223 | kpagpLGATA | 649953 | sldrSLALAaeep |
| 164690 | fLLVLLdyqgmlp | 483957 | reSNVGGiqql | 575691 | nrypASSLVvv | 691126 | klnrypASSLVvvr |
| 164772 | gvdtGIDIShsdf | 485150 | rySGNQVlf | 577376 | rVLNVTnlef | 691145 | kpTLSALpsplvts |
| 178609 | avvvlkrLPDALadg | 485418 | sedpsGKKAVl | 577393 | rvqGYFASf | 691655 | neqklnrypASSLVv |
| 182409 | stvASSLVLLVSLga | 487836 | TVLEKfrylpk | 578014 | SPRTPnrsv | 692295 | skpTLSALpsplvtsg |
| 182414 | yqilaiystvASSLV | 488193 | vifftSGTTGfpk | 578015 | SPRTPsntp | 694354 | eskrKKSFLlcig |
| 184585 | lrTTTVSgkl | 488539 | vVAPLLrkv | 578016 | SPRTPsntpsa | 695746 | pltspttsqLRSSAp |
| 190442 | hELLVLvkkaq | 488926 | ypASSLVvv | 578044 | SPSVPktsa | 695843 | pSASGSsgntptppn |
| 194133 | llaAWTARa | 489284 | LLLPLpvpa | 579718 | vyLKHLLpk | 695894 | pttsqLRSSApshaq |
| 196781 | sILEKTsay | 490154 | araLLLPLl | 581635 | aeLLLPLkvl | 696039 | qLRSSApshaqtpwp |
| 213534 | kssSGTKTtk | 492412 | irfgLLPLSm | 581817 | anatLLPLSl | 699244 | aqhSGLGGvshy |
| 223189 | ldLLLPLnl | 492430 | irfSGTTGqm | 582446 | eeLLLPLly | 699571 | asiVAPLLl |
| 223510 | pelLLLPL | 492987 | lepcsrlLLLPLl | 583971 | iamhaaLLLAI | 699594 | aslVAPLLi |
| 223880 | seeLLLPLl | 493322 | mpepasrclLLLPL | 584143 | ildksVAPLL | 699595 | aslVAPLLl |
| 226701 | yvftLLVSL | 493610 | plLLVSLw | 584764 | kgVSAAGilek | 700497 | deVTLPNvv |
| 240338 | sASSLVnldslv | 493947 | qrqqLLVSL | 584945 | klrEELREk | 700729 | difqQTPLGr |
| 243935 | FLDIWtyna | 495137 | srlLLLPLl | 587249 | prclLLVLL | 700885 | dpSGTKTcidtkeg |
| 419699 | gpprlLLLPL | 495478 | traLLLPLl | 587956 | raqggLLVLL | 702273 | EELREkyrry |
| 423950 | alLKHLLsy | 496437 | eirTVLEKl | 589061 | rrgELLVLr | 702274 | EELRElanky |
| 424543 | fLLPLSlif | 497010 | tpvyLGATAgmrll | 590120 | srsKIVLLv | 703553 | erySGNQVl |
| 426499 | nfkAWTARy | 504703 | clyvLLLAI | 590169 | stsSPSVPk | 704661 | evvtSEGKTk |
| 430136 | fspdLLGDPdny | 505049 | elitILEKT | 590856 | vpglcllvll | 705071 | fAQPAFml |
| 430260 | fTVLEKfry | 505187 | fasVAPLLef | 590986 | vsgTLPDGhmp | 706516 | fsLLPLShl |
| 435575 | rrlLLLPLl | 505268 | flaptfSGLTSi | 592071 | dttyinhvvSVAGWg | 710491 | ieILEKTttiy |
| 435576 | rrlLLLPLll | 507273 | mpllLLLPL | 594553 | atiEELRErvw | 711114 | ipingSPRTPr |
| 436423 | apfGPIKSidm | 507346 | mtlLLLPL | 595684 | gLLAIVkv | 711645 | itnvAELLV |
| 437494 | gAGGALfvhrd | 507484 | palSPSVPl | 600696 | qttTVLEKy | 712552 | kfpeiVAPLL |
| 437792 | gSGLGGltdk | 510341 | ypASSLVv | 601366 | rTLPDGthel | 713254 | klkikelre |
| 440682 | SPRTPvspvkf | 511858 | ardSLALArpkssdvy | 601983 | sryLLPLSalgtvag | 713313 | kLLLAIktk |
| 441210 | TVLEKvyel | 518869 | inhvvSVAGWgisdg | 602564 | tiEELRErvw | 716976 | ltneKIVLL |
| 442404 | apaAPGRAl | 519272 | itILEKTvspdrle | 610338 | QEVKAitkl | 720288 | qhyelcSGNQV |
| 443560 | erySGNQVlf | 520276 | kqqeLLVSL | 611939 | rrvkAELLV | 721762 | rgaLLPLSi |
| 444320 | glsLLPLSek | 521984 | lrqaAGGALqvvhsr | 614291 | asfapISFAIk | 722338 | rlLLLPLl |
| 445722 | kpkhPTTGI | 523925 | qaAGGALqvvhsrql | 615815 | evAELLVrh | 722416 | rlprLLVLL |
| 448068 | rvrvPTTGI | 532960 | mPTTGIney | 616957 | glvnSGLTSv | 723746 | rvpaLLVLL |
| 448661 | SPRTPpqrf | 535612 | ELLVLrqkhsepsrf | 620774 | kvleAELLVLr | 723778 | rvpsLLVLL |
| 448662 | SPRTPtpfkhal | 537116 | nkvleAELLVLrqkh | 623038 | qrAGGALsi | 724649 | SEGKTfqly |
| 448918 | sryLLPLSa | 541075 | allpAGGALqh | 627837 | vPTTGIiey | 724650 | SEGKTkpli |
| 449866 | VSAAGlvqgl | 541668 | eEELREkqay | 628836 | AELLVkgyei | 725019 | sgdGPIKSv |
| 453784 | flplLLVLL | 541699 | EELREkqay | 628959 | ailhLLVSL | 725662 | slVAPLLi |
| 456288 | LLLAIiphv | 544699 | rggaAGGALp | 630008 | dvAGGALthsll | 727559 | TAPDAaltl |
| 456316 | LLLPLplll | 545442 | srvpLLLPL | 632600 | iLLLPLhtg | 728413 | TLPDGthel |
| 457304 | ntlLLVSL | 548131 | hLLGDPmanv | 633968 | lLLLPLpvpa | 728445 | TLSALyarr |
| 457363 | pekTLSALl | 551494 | esyTLPDGrii | 634370 | lprLLVLLa | 729508 | tvpdLLLPL |
| 458091 | rlAELLVsv | 553367 | kpvlqkyAELLV | 634991 | mplhVAPLL | 732341 | yAPDYSsrl |
Column 1: Epitopes listed according to the IEDB-ID number. Epitope details and references at .