| Literature DB >> 31148856 |
Buket Er Urganci1, Ibrahim Acikbas1, F Rezzan Er2.
Abstract
BACKGROUND: Psoriasis is a chronic, inflammatory skin disease. The etiology of the disease is unknown. It is a polygenic and multifactorial disease, which interacts with genetic and environmental factors. Genetic factors (polymorphism/mutation) can alter the immune system and normal physiologically functioning keratinocytes to pathological or predisposition levels. AIMS: We aimed to investigate psoriasis at a different and novel window by searching for vascular and immunological variations and intersections in psoriasis. We investigated the main vascular and hypoxic controlling factors, which are vascular endothelial growth factor (VEGF) and hypoxia inducible factor 1 alpha (HIF-1α), as well as immunological and serotonergic factors, such as TNF-α, IL-10, and 5HT2A, which could connect each other to the pathogenesis of psoriasis. SUBJECTS AND METHODS: Nine single nucleotide polymorphisms (SNPs) in five genes were genotyped by mini-array format in 300 subjects: VEGF (rs2010963, rs833061, and rs1570360), HIF-1α (rs11549465), TNF-α (rs361525, rs1799964, and rs1800629), IL-10 (rs1800896), and 5HT2A (rs6311).Entities:
Keywords: 5HT2A; HIF-1α; IL-10; TNF-α; VEGF; psoriasis
Year: 2019 PMID: 31148856 PMCID: PMC6537683 DOI: 10.4103/ijd.IJD_422_18
Source DB: PubMed Journal: Indian J Dermatol ISSN: 0019-5154 Impact factor: 1.494
Genotype and allele frequencies of psoriasis patient and control groups
| SNP | Genotype/Allele | Psoriasis patients | Control group | |||
|---|---|---|---|---|---|---|
| % | % | |||||
| TNF-α rs361525 (−238A/G) | GG | 135 | 90.0 | 130 | 86.7 | 0.306 |
| GA | 15 | 10.0 | 18 | 12.0 | ||
| AA | 0 | 0 | 2 | 1.3 | ||
| G | 285 | 95.0 | 278 | 92.7 | 0.234 | |
| A (minor allele) | 15 | 5.0 | 22 | 7.3 | ||
| TNF-α rs1799964 (−1031 T/C) | CC | 8 | 5.3 | 8 | 5.3 | 0.759 |
| CT | 54 | 36.0 | 48 | 32.0 | ||
| TT | 88 | 58.7 | 94 | 62.7 | ||
| C | 64 | 21.3 | 70 | 23.3 | 0.556 | |
| T (minor allele) | 236 | 78.8 | 230 | 76.7 | ||
| TNF-α rs1800629 (−308 A/G) | GG | 129 | 86.0 | 122 | 81.3 | 0.307 |
| GA | 20 | 13.3 | 24 | 16.0 | ||
| AA | 1 | 0.7 | 4 | 2.7 | ||
| G | 268 | 89.3 | 278 | 92.7 | 0.153 | |
| A (minor allele) | 32 | 10.7 | 22 | 7.3 | ||
| VEGF rs2010963 (+405 C/G) | GG | 52 | 34.7 | 55 | 36.7 | 0.934 |
| GC | 78 | 52.0 | 76 | 50.7 | ||
| CC | 20 | 13.3 | 19 | 12.6 | ||
| G | 186 | 62.0 | 183 | 61.0 | 0.801 | |
| C (minor allele) | 114 | 38.0 | 117 | 39.0 | ||
| VEGF rs833061 (−460 T/C) | CC | 27 | 18.0 | 23 | 15.3 | 0.824 |
| CT | 74 | 49.3 | 76 | 50.7 | ||
| TT | 49 | 32.7 | 51 | 34.0 | ||
| C | 122 | 40.7 | 128 | 42.7 | 0.619 | |
| T (minor allele) | 188 | 59.3 | 172 | 57.3 | ||
| VEGF rs1570360 (−1154 A/G) | GG | 72 | 48.0 | 78 | 52.0 | 0.127 |
| GA | 56 | 37.3 | 61 | 40.7 | ||
| AA | 22 | 14.7 | 11 | 7.3 | ||
| G | 217 | 72.3 | 200 | 66.7 | 0.131 | |
| A (minor allele) | 83 | 27.7 | 100 | 33.3 | ||
| HIF1-α rs11549465 (−1772 T/C) | CC | 109 | 7.7 | 123 | 82.0 | 0.155 |
| CT | 38 | 25.3 | 25 | 16.7 | ||
| TT | 3 | 2.0 | 2 | 1.3 | ||
| C | 271 | 90.3 | 256 | 85.3 | 0.061 | |
| T (minor allele) | 29 | 9.7 | 44 | 14.7 | ||
| IL-10 rs1800896 (−1082 C/T) | TT | 57 | 38.0 | 66 | 44.0 | 0.503 |
| TC | 78 | 52.0 | 68 | 45.3 | ||
| CC | 15 | 10.0 | 16 | 10.7 | ||
| C (minor allele) | 100 | 33.3 | 108 | 36.0 | 0.492 | |
| T | 200 | 66.7 | 192 | 64.0 | ||
| 5HT2A rs6311 (−1438 T/C) | CC | 50 | 33.3 | 51 | 34.0 | 0.562 |
| CT | 69 | 46.0 | 75 | 50.0 | ||
| TT | 31 | 20.7 | 24 | 16.0 | ||
| C | 173 | 57.7 | 169 | 56.3 | 0.741 | |
| T (minor allele) | 127 | 42.3 | 131 | 43.7 | ||
Onset of psoriasis versus SNP
| SNP | Genotype/Allele | Type I psoriasis | Type II psoriasis | |||
|---|---|---|---|---|---|---|
| % | % | |||||
| rs1800629 | GG | 80 | 80.8 | 49 | 96.1 | 0.038 |
| GA | 18 | 18.2 | 2 | 3.9 | ||
| AA | 1 | 1.0 | 0 | 0 | ||
| G | 178 | 89.9 | 100 | 98.0 | 0.010 | |
| A | 20 | 10.1 | 2 | 2.0 | ||
| rs833061 | CC | 23 | 23.2 | 4 | 7.8 | 0.05 |
| CT | 47 | 47.5 | 27 | 52.9 | ||
| TT | 29 | 29.3 | 20 | 39.2 | ||
| C | 93 | 47.0 | 35 | 34.3 | 0.035 | |
| T | 105 | 53.0 | 67 | 65.7 | ||
Onset of psoriasis and family history
| Type I psoriasis | Type II psoriasis | ||||
|---|---|---|---|---|---|
| % | % | ||||
| Sporadic disease | 65 | 65.7 | 45 | 88.2 | 0.003 |
| Familial disease | 34 | 34.3 | 6 | 11.8 | |
VEGF rs1570360 and family history
| Family history absent | Family history present | |||||
|---|---|---|---|---|---|---|
| % | % | |||||
| VEGF rs1570360 (−1154 A/G) | GG | 60 | 54.5 | 12 | 30 | 0.025 |
| GA | 35 | 31.8 | 21 | 52.5 | ||
| AA | 15 | 13.7 | 7 | 17.5 | ||