Literature DB >> 31147937

Purification and Identification of Naturally Presented MHC Class I and II Ligands.

Annika Nelde1, Daniel J Kowalewski1, Stefan Stevanović2.   

Abstract

The large-scale and in-depth identification of MHC class I- and II-presented peptides is indispensable for gaining insight into the fundamental rules of immune recognition as well as for developing innovative immunotherapeutic approaches against cancer and other diseases. In this chapter we briefly review the existing strategies for the isolation of MHC-restricted peptides and provide a detailed protocol for the immunoaffinity purification of MHC class I- and II-presented peptides from primary tissues or cells.

Entities:  

Keywords:  Antigen presentation; Human leukocyte antigen (HLA); Immunoaffinity purification; Immunopeptidomics; Ligandome analysis; Major histocompatibility complex (MHC); Mass spectrometry

Year:  2019        PMID: 31147937     DOI: 10.1007/978-1-4939-9450-2_10

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  16 in total

1.  The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.

Authors:  Juan Antonio Vizcaíno; Peter Kubiniok; Kevin A Kovalchik; Qing Ma; Jérôme D Duquette; Ian Mongrain; Eric W Deutsch; Bjoern Peters; Alessandro Sette; Isabelle Sirois; Etienne Caron
Journal:  Mol Cell Proteomics       Date:  2019-11-19       Impact factor: 5.911

2.  Guidance Document: Validation of a High-Performance Liquid Chromatography-Tandem Mass Spectrometry Immunopeptidomics Assay for the Identification of HLA Class I Ligands Suitable for Pharmaceutical Therapies.

Authors:  Michael Ghosh; Marion Gauger; Ana Marcu; Annika Nelde; Monika Denk; Heiko Schuster; Hans-Georg Rammensee; Stefan Stevanović
Journal:  Mol Cell Proteomics       Date:  2020-01-14       Impact factor: 5.911

3.  An input-controlled model system for identification of MHC bound peptides enabling laboratory comparisons of immunopeptidome experiments.

Authors:  Martin G Klatt; Zita E H Aretz; Michael Curcio; Ron S Gejman; Heather F Jones; David A Scheinberg
Journal:  J Proteomics       Date:  2020-08-03       Impact factor: 4.044

4.  Immunopeptidomics-Guided Warehouse Design for Peptide-Based Immunotherapy in Chronic Lymphocytic Leukemia.

Authors:  Annika Nelde; Yacine Maringer; Tatjana Bilich; Helmut R Salih; Malte Roerden; Jonas S Heitmann; Ana Marcu; Jens Bauer; Marian C Neidert; Claudio Denzlinger; Gerald Illerhaus; Walter Erich Aulitzky; Hans-Georg Rammensee; Juliane S Walz
Journal:  Front Immunol       Date:  2021-07-08       Impact factor: 7.561

Review 5.  Deciphering Human Leukocyte Antigen Susceptibility Maps From Immunopeptidomics Characterization in Oncology and Infections.

Authors:  Pablo Juanes-Velasco; Alicia Landeira-Viñuela; Vanessa Acebes-Fernandez; Ángela-Patricia Hernández; Marina L Garcia-Vaquero; Carlota Arias-Hidalgo; Halin Bareke; Enrique Montalvillo; Rafael Gongora; Manuel Fuentes
Journal:  Front Cell Infect Microbiol       Date:  2021-05-28       Impact factor: 5.293

6.  Orf Virus-Based Vaccine Vector D1701-V Induces Strong CD8+ T Cell Response against the Transgene but Not against ORFV-Derived Epitopes.

Authors:  Alena Reguzova; Michael Ghosh; Melanie Müller; Hanns-Joachim Rziha; Ralf Amann
Journal:  Vaccines (Basel)       Date:  2020-06-10

7.  Identification of HCMV-derived T cell epitopes in seropositive individuals through viral deletion models.

Authors:  Maren Lübke; Stefanie Spalt; Daniel J Kowalewski; Cosima Zimmermann; Liane Bauersfeld; Annika Nelde; Leon Bichmann; Ana Marcu; Janet Kerstin Peper; Oliver Kohlbacher; Juliane S Walz; Vu Thuy Khanh Le-Trilling; Hartmut Hengel; Hans-Georg Rammensee; Stefan Stevanović; Anne Halenius
Journal:  J Exp Med       Date:  2020-03-02       Impact factor: 14.307

8.  Integrative -omics and HLA-ligandomics analysis to identify novel drug targets for ccRCC immunotherapy.

Authors:  Anna Reustle; Moreno Di Marco; Carolin Meyerhoff; Annika Nelde; Juliane S Walz; Stefan Winter; Siahei Kandabarau; Florian Büttner; Mathias Haag; Linus Backert; Daniel J Kowalewski; Steffen Rausch; Jörg Hennenlotter; Viktoria Stühler; Marcus Scharpf; Falko Fend; Arnulf Stenzl; Hans-Georg Rammensee; Jens Bedke; Stefan Stevanović; Matthias Schwab; Elke Schaeffeler
Journal:  Genome Med       Date:  2020-03-30       Impact factor: 11.117

Review 9.  Critical Review of Existing MHC I Immunopeptidome Isolation Methods.

Authors:  Alexandr Kuznetsov; Alice Voronina; Vadim Govorun; Georgij Arapidi
Journal:  Molecules       Date:  2020-11-19       Impact factor: 4.411

10.  Mild Acid Elution and MHC Immunoaffinity Chromatography Reveal Similar Albeit Not Identical Profiles of the HLA Class I Immunopeptidome.

Authors:  Theo Sturm; Benedikt Sautter; Tobias P Wörner; Stefan Stevanović; Hans-Georg Rammensee; Oliver Planz; Albert J R Heck; Ruedi Aebersold
Journal:  J Proteome Res       Date:  2020-11-03       Impact factor: 4.466

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