Literature DB >> 31146119

Drug promiscuity: Exploring the polypharmacology potential of 1, 3, 6-trisubstituted 1, 4-diazepane-7-ones as an inhibitor of the 'god father' of immune checkpoint.

Opeyemi S Soremekun1, Fisayo A Olotu1, Clement Agoni1, Mahmoud E S Soliman2.   

Abstract

High production cost, instability, low tumor penetration are some of the shortcomings that have characterized and undermined the use of antibodies as a target for Cytotoxic T-lymphocytes associated protein 4 (CTLA-4). Design and discovery of small molecule inhibitors have therefore become a sine qua non in targeting immune proteins implicated in immune disorders. In this study, we utilized a drug repositioning approach to explore the characteristic feature of unrelated proteins to have similar binding sites and the promiscuity of drugs to repurpose an existing drug to target CTLA-4. CTLA-4 and Kallikrein-7 were found to have similar binding sites, we therefore used 1, 3, 6-trisubstituted 1, 4-diazepane-7-ones (TDSO) which is an inhibitor of Kallikrein-7 as our lead compound. High throughput screening using TDSO as a lead compound resulted in 9 hits with ZINC04515726 and ZINC08985213 having the highest binding score. We went ahead to investigate the interaction of these compounds with CTLA-4 by conducting a molecular dynamic simulation. Molecular Mechanics/Poisson-Boltzmann Surface Area (MM/PBSA) estimations revealed that TDSO had the highest binding energy value of -28.51Kcal/mol, with ZINC04515726 and ZINC08985213 having -23.76Kcal/mol and -21.03Kcal/mol respectively. The per-residue decomposition highlighted Tyr24, Ala25, Gly28, Ala30, Tyr53 and Asn72 as having significantly high electrostatic energy contributions and the main contributing residues to the binding of TDSO, ZINC04515726 and ZINC08985213 to Cytotoxic T lymphocytes CTLA-4. Summarily, from the results gathered, we proposed that TDSO can be an effective immune check point small molecule inhibitor against the suppression of T-cell activation, proliferation, and tumor cell eradication.
Copyright © 2019. Published by Elsevier Ltd.

Entities:  

Keywords:  Cytotoxic-lymphocytes associated protein 4; Drug repurposing; Polypharmacology

Mesh:

Substances:

Year:  2019        PMID: 31146119     DOI: 10.1016/j.compbiolchem.2019.05.009

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN: 1476-9271            Impact factor:   2.877


  5 in total

1.  Transcription-translation error: In-silico investigation of the structural and functional impact of deleterious single nucleotide polymorphisms in GULP1 gene.

Authors:  Opeyemi S Soremekun; Chisom Ezenwa; Mahmoud Soliman; Tinashe Chikowore; Oyekanmi Nashiru; Segun Fatumo
Journal:  Inform Med Unlocked       Date:  2020-12-24

2.  Exploring the effect of ritonavir and TMC-310911 on SARS-CoV-2 and SARS-CoV main proteases: potential from a molecular perspective.

Authors:  Opeyemi S Soremekun; Kehinde F Omolabi; Adeniyi T Adewumi; Mahmoud Es Soliman
Journal:  Future Sci OA       Date:  2020-11-09

3.  Phytomedicine in Disease Management: In-Silico Analysis of the Binding Affinity of Artesunate and Azadirachtin for Malaria Treatment.

Authors:  Michael P Okoh; Rajeev K Singla; Chijioke Madu; Opeyemi Soremekun; Johnson Adejoh; Lukman A Alli; Bairong Shen
Journal:  Front Pharmacol       Date:  2021-11-30       Impact factor: 5.810

4.  Structural alterations in the catalytic core of hSIRT2 enzyme predict therapeutic benefits of Garcinia mangostana derivatives in Alzheimer's disease: molecular dynamics simulation study.

Authors:  Oluwole B Akawa; Temitayo I Subair; Opeyemi S Soremekun; Fisayo A Olotu; Mahmoud E S Soliman
Journal:  RSC Adv       Date:  2021-02-18       Impact factor: 3.361

5.  Development of Halogenated Pyrazolines as Selective Monoamine Oxidase-B Inhibitors: Deciphering via Molecular Dynamics Approach.

Authors:  Aathira Sujathan Nair; Jong-Min Oh; Vishal Payyalot Koyiparambath; Sunil Kumar; Sachithra Thazhathuveedu Sudevan; Opeyemi Soremekun; Mahmoud E Soliman; Ahmed Khames; Mohamed A Abdelgawad; Leena K Pappachen; Bijo Mathew; Hoon Kim
Journal:  Molecules       Date:  2021-05-28       Impact factor: 4.411

  5 in total

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