Literature DB >> 31141302

NGS-based targeted resequencing identified rare subtypes of albinism: Providing accurate molecular diagnosis for Japanese patients with albinism.

Ken Okamura1, Masahiro Hayashi1, Yuko Abe1, Michihiro Kono2, Kimiko Nakajima3, Yumi Aoyama4, Chikako Nishigori5, Hiroshi Ishimoto6, Yuji Ishimatsu7, Mika Nakajima8, Yutaka Hozumi1, Tamio Suzuki1.   

Abstract

Albinism, which is commonly inherited as an autosomal recessive trait, is characterized by a reduction or absence of melanin in the eyes, skin, and hair. To date, more than 20 causal genes for albinism have been identified; thus, the accurate diagnosis of albinism requires next-generation sequencing (NGS). In this study, we analyzed 46 patients who tested negative for oculocutaneous albinism (OCA)1-4 and Hermansky-Pudlak syndrome (HPS)1 based on conventional analysis, in addition to 28 new Japanese patients, using NGS-based targeted resequencing. We identified a genetic background for albinism in 18 of the 46 patients (39%), who were previously tested negative according to the conventional analysis. In addition, we unveiled a genetic predisposition toward albinism in 23 of the 28 new patients (82%). We identified six patients with rare subtypes of albinism, including HPS3, HPS4, and HPS6, and found 12 novel pathological mutations in albinism-related genes. Furthermore, most patients who were not diagnosed with albinism by the NGS analysis showed mild manifestations of albinism without apparent eye symptoms and harbored only one heterozygous mutation, occasionally in combination with skin-color associated gene variants.
© 2019 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  BLOC-2; BLOC-3; albinism; next-generation sequencing; targeted resequencing

Mesh:

Substances:

Year:  2019        PMID: 31141302     DOI: 10.1111/pcmr.12800

Source DB:  PubMed          Journal:  Pigment Cell Melanoma Res        ISSN: 1755-1471            Impact factor:   4.693


  8 in total

Review 1.  Clinical and Mutation Spectrum of Autosomal Recessive Non-Syndromic Oculocutaneous Albinism (nsOCA) in Pakistan: A Review.

Authors:  Muhammad Ikram Ullah
Journal:  Genes (Basel)       Date:  2022-06-16       Impact factor: 4.141

2.  A qRT-PCR Method Capable of Quantifying Specific Microorganisms Compared to NGS-Based Metagenome Profiling Data.

Authors:  Jinuk Jeong; Seyoung Mun; Yunseok Oh; Chun-Sung Cho; Kyeongeui Yun; Yongju Ahn; Won-Hyong Chung; Mi Young Lim; Kyung Eun Lee; Tae Soon Hwang; Kyudong Han
Journal:  Microorganisms       Date:  2022-01-30

3.  Hermansky-Pudlak Syndrome: Identification of Novel Variants in the Genes HPS3, HPS5, and DTNBP1 (HPS-7).

Authors:  Doris Boeckelmann; Mira Wolter; Katharina Neubauer; Felix Sobotta; Antonia Lenz; Hannah Glonnegger; Barbara Käsmann-Kellner; Jasmin Mann; Stephan Ehl; Barbara Zieger
Journal:  Front Pharmacol       Date:  2022-01-19       Impact factor: 5.810

4.  NGS-based targeted sequencing identified two novel variants in Southwestern Chinese families with oculocutaneous albinism.

Authors:  Yuanyuan Xiao; Cong Zhou; Hanbing Xie; Shuang Huang; Jing Wang; Shanling Liu
Journal:  BMC Genomics       Date:  2022-04-29       Impact factor: 3.969

5.  Hermansky-Pudlak syndrome: Mutation update.

Authors:  Marjan Huizing; May C V Malicdan; Jennifer A Wang; Hadass Pri-Chen; Richard A Hess; Roxanne Fischer; Kevin J O'Brien; Melissa A Merideth; William A Gahl; Bernadette R Gochuico
Journal:  Hum Mutat       Date:  2020-01-23       Impact factor: 4.700

6.  Two Novel Homozygous HPS6 Mutations (Double Mutant) Identified by Whole-Exome Sequencing in a Saudi Consanguineous Family Suspected for Oculocutaneous Albinism.

Authors:  Sajjad Karim; Samah Saharti; Nofe Alganmi; Zeenat Mirza; Ahmed Alfares; Shereen Turkistany; Manal Al-Attas; Hend Noureldin; Khadega Al Sakkaf; Heba Abusamra; Mohammed Al-Qahtani; Adel Abuzenadah
Journal:  Life (Basel)       Date:  2021-12-23

7.  Delineating Novel and Known Pathogenic Variants in TYR, OCA2 and HPS-1 Genes in Eight Oculocutaneous Albinism (OCA) Pakistani Families.

Authors:  Muhammad Shakil; Abida Akbar; Nazish Mahmood Aisha; Intzar Hussain; Muhammad Ikram Ullah; Muhammad Atif; Haiba Kaul; Ali Amar; Muhammad Zahid Latif; Muhammad Atif Qureshi; Saqib Mahmood
Journal:  Genes (Basel)       Date:  2022-03-12       Impact factor: 4.096

8.  A novel likely pathogenic variant in a patient with Hermansky-Pudlak syndrome.

Authors:  Lisa A Lansdon; Dong Chen; Eric T Rush; Kendra Engleman; Lei Zhang; Carol J Saunders; Gabor Oroszi
Journal:  Cold Spring Harb Mol Case Stud       Date:  2021-10-19
  8 in total

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