Literature DB >> 31140117

Can diatom girdle band pores act as a hydrodynamic viral defense mechanism?

J W Herringer1, D Lester2, G E Dorrington2, G Rosengarten2.   

Abstract

Diatoms are microalgae encased in highly structured and regular frustules of porous silica. A long-standing biological question has been the function of these frustules, with hypotheses ranging from them acting as photonic light absorbers to being particle filters. While it has been observed that the girdle band pores of the frustule of Coscinodiscus sp. resemble those of a hydrodynamic drift ratchet, we show using scaling arguments and numerical simulations that they cannot act as effective drift ratchets. Instead, we present evidence that frustules are semi-active filters. We propose that frustule pores simultaneously repel viruses while promoting uptake of ionic nutrients via a recirculating, electroosmotic dead-end pore flow, a new mechanism of "hydrodynamic immunity".

Entities:  

Keywords:  Diatom frustule; Drift ratchet; Electroosmosis; Girdle band pores

Mesh:

Substances:

Year:  2019        PMID: 31140117      PMCID: PMC6548801          DOI: 10.1007/s10867-019-09525-5

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  32 in total

1.  The role of external carbonic anhydrase in photosynthesis during growth of the marine diatom Chaetoceros muelleri.

Authors:  Tamsyne Jade Smith-Harding; John Beardall; James Gordon Mitchell
Journal:  J Phycol       Date:  2017-08-30       Impact factor: 2.923

2.  The formation and fate of internal waves in the South China Sea.

Authors:  Matthew H Alford; Thomas Peacock; Jennifer A MacKinnon; Jonathan D Nash; Maarten C Buijsman; Luca R Centurioni; Luca R Centuroni; Shenn-Yu Chao; Ming-Huei Chang; David M Farmer; Oliver B Fringer; Ke-Hsien Fu; Patrick C Gallacher; Hans C Graber; Karl R Helfrich; Steven M Jachec; Christopher R Jackson; Jody M Klymak; Dong S Ko; Sen Jan; T M Shaun Johnston; Sonya Legg; I-Huan Lee; Ren-Chieh Lien; Matthieu J Mercier; James N Moum; Ruth Musgrave; Jae-Hun Park; Andrew I Pickering; Robert Pinkel; Luc Rainville; Steven R Ramp; Daniel L Rudnick; Sutanu Sarkar; Alberto Scotti; Harper L Simmons; Louis C St Laurent; Subhas K Venayagamoorthy; Yu-Huai Wang; Joe Wang; Yiing J Yang; Theresa Paluszkiewicz; Tswen-Yung David Tang
Journal:  Nature       Date:  2015-05-07       Impact factor: 49.962

Review 3.  The life of diatoms in the world's oceans.

Authors:  E Virginia Armbrust
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

4.  Rectified motion in an asymmetric channel: the role of hydrodynamic interactions with walls.

Authors:  Behzad Golshaei; Ali Najafi
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-02-02

5.  Dynamic sinking behaviour in marine phytoplankton: rapid changes in buoyancy may aid in nutrient uptake.

Authors:  Brad J Gemmell; Genesok Oh; Edward J Buskey; Tracy A Villareal
Journal:  Proc Biol Sci       Date:  2016-10-12       Impact factor: 5.349

6.  Size scaling of extracellular carbonic anhydrase activity in centric marine diatoms.

Authors:  Chen Shen; Brian M Hopkinson
Journal:  J Phycol       Date:  2015-01-27       Impact factor: 2.923

7.  Origins of concentration gradients for diffusiophoresis.

Authors:  Darrell Velegol; Astha Garg; Rajarshi Guha; Abhishek Kar; Manish Kumar
Journal:  Soft Matter       Date:  2016-05-25       Impact factor: 3.679

8.  Localization of soluble beta-carbonic anhydrase in the marine diatom Phaeodactylum tricornutum. Sorting to the chloroplast and cluster formation on the girdle lamellae.

Authors:  Yuji Tanaka; Daisuke Nakatsuma; Hisashi Harada; Maki Ishida; Yusuke Matsuda
Journal:  Plant Physiol       Date:  2005-04-22       Impact factor: 8.340

9.  Isolation and characterization of a novel single-stranded RNA virus infecting the bloom-forming diatom Rhizosolenia setigera.

Authors:  Keizo Nagasaki; Yuji Tomaru; Noriaki Katanozaka; Yoko Shirai; Kensho Nishida; Shigeru Itakura; Mineo Yamaguchi
Journal:  Appl Environ Microbiol       Date:  2004-02       Impact factor: 4.792

10.  Wavelength and orientation dependent capture of light by diatom frustule nanostructures.

Authors:  Julien Romann; Jean-Christophe Valmalette; Matilde Skogen Chauton; Gabriella Tranell; Mari-Ann Einarsrud; Olav Vadstein
Journal:  Sci Rep       Date:  2015-12-02       Impact factor: 4.379

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