| Literature DB >> 31139764 |
Samrina Mahtab1, Parmita Kar1, Soma Saha1, Vishnubhatla Sreenivas2, Alessandra Sottini3, Luisa Imberti3, Ravinder Goswami1.
Abstract
CONTEXT: Pathogenesis of idiopathic hypoparathyroidism (IH) is under investigation. Abnormalities in central immune tolerance have yet not been investigated in this condition. T-cell receptor excision circles (TRECs) and kappa-deleting recombination excision circles (KRECs), formed during receptor gene rearrangements, are tools to assess central T- and B-cell output.Entities:
Keywords: CaSRAb; T-cell receptor excision circles; autoimmunity; idiopathic hypoparathyroidism; kappa-deleting recombination excision circles
Year: 2019 PMID: 31139764 PMCID: PMC6532674 DOI: 10.1210/js.2018-00344
Source DB: PubMed Journal: J Endocr Soc ISSN: 2472-1972
Primer and Probe Sequences Used During q-PCR for TRECs, KRECs, and Albumin Gene
| Targets | Forward and Reverse Primers | Probe | Product (bp) |
|---|---|---|---|
| TREC | 5′-ΤGCCACATCCCTTTCAACCA-3′, 5′-CAGGTGCCTATGCATCACCG-3′ | 5′-FAM-ACACCTCTGGTTTTTGTAAAGGTGCCCACT-BHQ1-3′ | 96 |
| KREC | 5′-TCCCTTAGTGGCATTATTTGTATCACT-3′, 5′-AGGAGCCAGCTCTTACCCTAGAGT-3′ | 5′-Cyc-TCTGCACGGGCAGCAGGTTGG-BHQ2-3′ | 90 |
| Albumin | 5′-GCTGTCATCTCTTGTGGGCTGT-3′, 5′-ACTCATGGGAGCTGCTGGTTC-3′ | 5′-HEX-GGAGAGATTTGTGTGGGCATGACAGG-BHQ1-3′ | 138 |
Abbreviation: bp, base pair.
Figure 1.Standard curves showing log regression for TRECs, KRECs, and albumin gene concentration and Ct. R2, regression coefficient; y, Ct values.
Clinical Characteristics and TREC and KREC Copies [Mean ± SD and Median (IQR)] in Patients With IH, T1D, and AT and HCs
| Parameters | IH (n = 181) | T1D (n = 133) | AT (n = 53) | HC (n = 135) |
| |||||
|---|---|---|---|---|---|---|---|---|---|---|
| IH vs T1D | IH vs AT | IH vs HC | T1D vs AT | T1D vs HC | AT vs HC | |||||
| Age, y | 29.9 ± 13.2 | 30.7 ± 9.9 | 36.7 ± 13.8 | 32.4 ± 13.2 | 0.99 | 0.003 | 0.49 | 0.019 | 0.99 | 0.21 |
| Male/female, number | 91/90 | 55/78 | 12/41 | 79/56 | ||||||
| BMI, kg/m2 | 20.8 ± 4.6 | 21.8 ± 5.3 | 24.5 ± 5.4 | 24.2 ± 4.2 | 0.39 | <0.001 | <0.001 | 0.003 | <0.000 | 0.99 |
| Duration of illness, y | 7.1 ± 7.2 | 15.6 ± 7.8 | 3.0 ± 3.7 | — | <0.001 | 0.001 | — | <0.001 | — | — |
| 5 (2–10) | 15 (10–21) | 2 (0.83–4) | ||||||||
| TREC copies/50 ng of genomic DNA | 61 ± 44 | 75 ± 34 | 49 ± 33 | 59 ± 38 | <0.001 | 0.13 | 0.99 | <0.001 | <0.001 | 0.07 |
| 47 (32–76) | 69 (51–97) | 37 (28–51) | 51 (35–68) | |||||||
| TREC copies/103 blood cells | 25 ± 21 | 35 ± 25 | 19 ± 16 | 32 ± 27 | <0.001 | 0.07 | 0.11 | <0.001 | 0.06 | <0.001 |
| 20 (11–32) | 29 (18–43) | 14 (9–20) | 24 (12–40) | |||||||
| KREC copies/50 ng of genomic DNA | 74 ± 62 | 85 ± 77 | 104 ± 99 | 68 ± 56 | 0.30 | 0.14 | 0.99 | 0.99 | 0.11 | 0.06 |
| 56 (34–91) | 60 (41–99) | 66 (37–122) | 51 (34–80) | |||||||
| KREC copies /103 blood cells | 29 ± 24 | 33 ± 24 | 38 ± 35 | 31 ± 23 | 0.10 | 0. 47 | 0.99 | 0.99 | 0.83 | 0.99 |
| 21 (14–34) | 28 (16–41) | 24 (16–48) | 23 (15–39) | |||||||
Differences in the TREC and KREC Copies [Mean ± SD and Median (IQR)] in Subsets of Patients With IH With CaSRAb and GCM2-R110W Gene Mutations
| Parameters | Subsets of IH | |||||
|---|---|---|---|---|---|---|
| Subset a | Subset b | Subset c | Intersubset Differences ( | |||
| With CaSRAb (>3.0 SDS) (n = 13) | With | Without CaSRAb or | a vs b | a vs c | b vs c | |
| TREC copies/50 ng of genomic DNA | 73 ± 51 | 76 ± 67 | 62 ± 46 | 0.91 | 0.68 | 0.99 |
| 46 (37–111) | 48 (23–107) | 48 (34–77) | ||||
| TREC copies /103 cells | 30 ± 16 | 24 ± 16 | 28 ± 20 | 0.46 | 0.47 | 0.99 |
| 28 (20–40) | 25 (9–33) | 22 (13–33) | ||||
| KREC copies/50 ng of genomic DNA | 87 ± 114 | 60 ± 36 | 73 ± 58 | 0.99 | 0.99 | 0.99 |
| 48 (36–82) | 51 (36–66) | 54 (32–100) | ||||
| KREC copies /103 cells | 31 ± 23 | 21 ± 10 | 32 ± 23 | 0.40 | 0.99 | 0.22 |
| 23 (18–35) | 19 (13–28) | 24 (17–43) | ||||