Literature DB >> 31138898

Integrating yeast chemical genomics and mammalian cell pathway analysis.

Fu-Lai Zhou1,2, Sheena C Li3, Yue Zhu1,2, Wan-Jing Guo1,2, Li-Jun Shao1,2, Justin Nelson4, Scott Simpkins4, De-Hua Yang1, Qing Liu1, Yoko Yashiroda3, Jin-Biao Xu5, Yao-Yue Fan5, Jian-Min Yue5, Minoru Yoshida3,6,7, Tian Xia8, Chad L Myers9, Charles Boone10,11, Ming-Wei Wang12,13.   

Abstract

Chemical genomics has been applied extensively to evaluate small molecules that modulate biological processes in Saccharomyces cerevisiae. Here, we use yeast as a surrogate system for studying compounds that are active against metazoan targets. Large-scale chemical-genetic profiling of thousands of synthetic and natural compounds from the Chinese National Compound Library identified those with high-confidence bioprocess target predictions. To discover compounds that have the potential to function like therapeutic agents with known targets, we also analyzed a reference library of approved drugs. Previously uncharacterized compounds with chemical-genetic profiles resembling existing drugs that modulate autophagy and Wnt/β-catenin signal transduction were further examined in mammalian cells, and new modulators with specific modes of action were validated. This analysis exploits yeast as a general platform for predicting compound bioactivity in mammalian cells.

Entities:  

Keywords:  Wnt/β-catenin signaling pathway; autophagy; chemical genomics; tubulin cytoskeleton assembly; yeast

Mesh:

Substances:

Year:  2019        PMID: 31138898      PMCID: PMC6786357          DOI: 10.1038/s41401-019-0231-y

Source DB:  PubMed          Journal:  Acta Pharmacol Sin        ISSN: 1671-4083            Impact factor:   6.150


  47 in total

Review 1.  Yeast as a model system for anticancer drug discovery.

Authors:  Julian A Simon; Antonio Bedalov
Journal:  Nat Rev Cancer       Date:  2004-06       Impact factor: 60.716

2.  Exploration of essential gene functions via titratable promoter alleles.

Authors:  Sanie Mnaimneh; Armaity P Davierwala; Jennifer Haynes; Jason Moffat; Wen-Tao Peng; Wen Zhang; Xueqi Yang; Jeff Pootoolal; Gordon Chua; Andres Lopez; Miles Trochesset; Darcy Morse; Nevan J Krogan; Shawna L Hiley; Zhijian Li; Quaid Morris; Jörg Grigull; Nicholas Mitsakakis; Christopher J Roberts; Jack F Greenblatt; Charles Boone; Chris A Kaiser; Brenda J Andrews; Timothy R Hughes
Journal:  Cell       Date:  2004-07-09       Impact factor: 41.582

3.  Evolution. Systematic humanization of yeast genes reveals conserved functions and genetic modularity.

Authors:  Aashiq H Kachroo; Jon M Laurent; Christopher M Yellman; Austin G Meyer; Claus O Wilke; Edward M Marcotte
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

4.  Systematic exploration of essential yeast gene function with temperature-sensitive mutants.

Authors:  Zhijian Li; Franco J Vizeacoumar; Sondra Bahr; Jingjing Li; Jonas Warringer; Frederick S Vizeacoumar; Renqiang Min; Benjamin Vandersluis; Jeremy Bellay; Michael Devit; James A Fleming; Andrew Stephens; Julian Haase; Zhen-Yuan Lin; Anastasia Baryshnikova; Hong Lu; Zhun Yan; Ke Jin; Sarah Barker; Alessandro Datti; Guri Giaever; Corey Nislow; Chris Bulawa; Chad L Myers; Michael Costanzo; Anne-Claude Gingras; Zhaolei Zhang; Anders Blomberg; Kerry Bloom; Brenda Andrews; Charles Boone
Journal:  Nat Biotechnol       Date:  2011-03-27       Impact factor: 54.908

Review 5.  Yeast as a model for medical and medicinal research.

Authors:  Willem H Mager; Joris Winderickx
Journal:  Trends Pharmacol Sci       Date:  2005-05       Impact factor: 14.819

6.  Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.

Authors:  E A Winzeler; D D Shoemaker; A Astromoff; H Liang; K Anderson; B Andre; R Bangham; R Benito; J D Boeke; H Bussey; A M Chu; C Connelly; K Davis; F Dietrich; S W Dow; M El Bakkoury; F Foury; S H Friend; E Gentalen; G Giaever; J H Hegemann; T Jones; M Laub; H Liao; N Liebundguth; D J Lockhart; A Lucau-Danila; M Lussier; N M'Rabet; P Menard; M Mittmann; C Pai; C Rebischung; J L Revuelta; L Riles; C J Roberts; P Ross-MacDonald; B Scherens; M Snyder; S Sookhai-Mahadeo; R K Storms; S Véronneau; M Voet; G Volckaert; T R Ward; R Wysocki; G S Yen; K Yu; K Zimmermann; P Philippsen; M Johnston; R W Davis
Journal:  Science       Date:  1999-08-06       Impact factor: 47.728

Review 7.  Yeast: an experimental organism for 21st Century biology.

Authors:  David Botstein; Gerald R Fink
Journal:  Genetics       Date:  2011-11       Impact factor: 4.562

Review 8.  Yeast models of Parkinson's disease-associated molecular pathologies.

Authors:  Sandra Tenreiro; Vanessa Franssens; Joris Winderickx; Tiago Fleming Outeiro
Journal:  Curr Opin Genet Dev       Date:  2017-06       Impact factor: 5.578

9.  Functional profiling of the Saccharomyces cerevisiae genome.

Authors:  Guri Giaever; Angela M Chu; Li Ni; Carla Connelly; Linda Riles; Steeve Véronneau; Sally Dow; Ankuta Lucau-Danila; Keith Anderson; Bruno André; Adam P Arkin; Anna Astromoff; Mohamed El-Bakkoury; Rhonda Bangham; Rocio Benito; Sophie Brachat; Stefano Campanaro; Matt Curtiss; Karen Davis; Adam Deutschbauer; Karl-Dieter Entian; Patrick Flaherty; Francoise Foury; David J Garfinkel; Mark Gerstein; Deanna Gotte; Ulrich Güldener; Johannes H Hegemann; Svenja Hempel; Zelek Herman; Daniel F Jaramillo; Diane E Kelly; Steven L Kelly; Peter Kötter; Darlene LaBonte; David C Lamb; Ning Lan; Hong Liang; Hong Liao; Lucy Liu; Chuanyun Luo; Marc Lussier; Rong Mao; Patrice Menard; Siew Loon Ooi; Jose L Revuelta; Christopher J Roberts; Matthias Rose; Petra Ross-Macdonald; Bart Scherens; Greg Schimmack; Brenda Shafer; Daniel D Shoemaker; Sharon Sookhai-Mahadeo; Reginald K Storms; Jeffrey N Strathern; Giorgio Valle; Marleen Voet; Guido Volckaert; Ching-yun Wang; Teresa R Ward; Julie Wilhelmy; Elizabeth A Winzeler; Yonghong Yang; Grace Yen; Elaine Youngman; Kexin Yu; Howard Bussey; Jef D Boeke; Michael Snyder; Peter Philippsen; Ronald W Davis; Mark Johnston
Journal:  Nature       Date:  2002-07-25       Impact factor: 49.962

Review 10.  Yeast as a Model for Alzheimer's Disease: Latest Studies and Advanced Strategies.

Authors:  Mathias Verduyckt; Hélène Vignaud; Tine Bynens; Jeff Van den Brande; Vanessa Franssens; Christophe Cullin; Joris Winderickx
Journal:  Methods Mol Biol       Date:  2016
View more
  1 in total

Review 1.  Targeting cellular senescence based on interorganelle communication, multilevel proteostasis, and metabolic control.

Authors:  Maria Cavinato; Corina T Madreiter-Sokolowski; Sabrina Büttner; Markus Schosserer; Werner Zwerschke; Sophia Wedel; Johannes Grillari; Wolfgang F Graier; Pidder Jansen-Dürr
Journal:  FEBS J       Date:  2020-12-08       Impact factor: 5.622

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.