Literature DB >> 31135153

Dielectric-Dependent Strength of Interlipid Hydrogen Bonding in Biomembranes: Model Case Study.

R G Efremov1,2,3.   

Abstract

Atomistic aspects of the structural organization, dynamics, and functioning of hydrated lipid bilayers-model cell membranes-are primarily governed by the fine balance of intermolecular interactions between all constituents of these systems. Besides the hydrophobic effect, which shapes the overall skeleton of lipid membranes, a very important contribution to their behavior is made by hydrogen bonds (H-bonds) between lipid head groups. The latter determine crucial phenomena in cell membranes, such as dynamic ultrananodomain organization, hydration, and fine-tuning of microscopic physicochemical properties that allow the membrane to adapt quickly when binding/insertion external agents (proteins, etc.). The characteristics of such H-bonds (strength, spatial localization, etc.) dramatically depend on the local polarity properties of the lipid-water environment. In this work, we calculated free energies of H-bonded complexes between typical donor (NH3+, NH, OH) and acceptor (C═O, OH, COO-, COOH) groups of lipids in vacuo and in a set of explicit solvents with dielectric constants (ε) from 1 to 78.3, which mimic membrane environment at different depths. This was done using Monte Carlo simulations and an assessment of the corresponding potential of mean force profiles. The strongest H-bonded complexes were observed in the nonpolar environment, and their strength increased sharply with decreasing ε below 17. When ε changed, the largest free energy gain (>10.8 kcal/mol) was observed for pairs of acceptors C═O and O(H) with donor NH3+. The complexation of the same acceptors with NH donor in this range of ε values was rather less sensitive to the environmental polarity, by ∼1.5 kcal/mol. Dielectric-dependent interactions of polar lipid groups with water were evaluated as well. The results explain the delicate balance that determines the unique pattern of H-bonds for a particular lipid bilayer. Understanding the factors that regulate the propensity for H-bonding in lipid bilayers provides a fundamental basis for the rational design of new membrane nano objects with predefined properties.

Entities:  

Year:  2019        PMID: 31135153     DOI: 10.1021/acs.jcim.9b00193

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  3 in total

1.  Effect of co-toxicity of lead and nanoplastics on the flavonoid biosynthetic pathway in dandelion (Taraxacum asiaticum Dahlst).

Authors:  Gao Minling; Youming Dong; Shengli Wang; Tianbo Wang; Linsen Bai; Zhengguo Song
Journal:  Planta       Date:  2022-10-07       Impact factor: 4.540

2.  Confined Dynamics of Water in Transmembrane Pore of TRPV1 Ion Channel.

Authors:  Yury A Trofimov; Nikolay A Krylov; Roman G Efremov
Journal:  Int J Mol Sci       Date:  2019-09-01       Impact factor: 5.923

Review 3.  Dynamic "Molecular Portraits" of Biomembranes Drawn by Their Lateral Nanoscale Inhomogeneities.

Authors:  Roman G Efremov
Journal:  Int J Mol Sci       Date:  2021-06-10       Impact factor: 5.923

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.