Literature DB >> 31130587

Biobank Establishment and Sample Management in the Tohoku Medical Megabank Project.

Naoko Minegishi1,2, Ichiko Nishijima1,2, Takahiro Nobukuni1,2, Hisaaki Kudo1,2, Noriko Ishida1,2, Takahiro Terakawa1,2, Kazuki Kumada1,2, Riu Yamashita1,2, Fumiki Katsuoka1,2, Soichi Ogishima1,2, Kichiya Suzuki1,2, Makoto Sasaki3,4, Mamoru Satoh3,4, Masayuki Yamamoto1,2.   

Abstract

The Tohoku Medical Megabank biobank (TMM biobank) is the first major population-based biobank established in Japan. The TMM biobank was established based on two population cohorts and is a reconstruction program from the Great East Japan Earthquake and Tsunami of 2011. The biobank stores more than 3.4 million tubes of biospecimens and associated health and analytic data obtained from approximately 150,000 TMM cohort participants between May 2013 and December 2018, and the TMM biobank currently shares high-quality specimens and data. Various biospecimens, including peripheral and cord blood mononuclear cells, buffy coat, plasma, serum, urine, breast milk and saliva have been collected in the TMM biobank. To minimize human error and maintain the quality of data and specimens, we have been utilizing laboratory information management system into various biobank procedures from registration to storage with various automation systems, such as liquid dispensing, DNA extraction and their storage. The biobank procedures for the quality management system (ISO 9001:2015) and information security management system (ISO 27001:2013) are certified by the International Organization for Standardization. The quality of our biobank samples fulfills the pre-analytical requirements for researchers conducting next-generation whole genome sequencing, DNA array analyses, proteomics, metabolomics, etc. We established analytical centers to conduct standard genomic and multiomic analyses in-house and share the generated data. Additionally, we generate thousands of Epstein-Barr virus (EBV)-transformed lymphoblastoid cell lines and proliferating T cells for functional studies. The TMM biobank serves as an indispensable infrastructure for academic, clinical and industrial research to actualize next-generation medicine in Japan.

Entities:  

Keywords:  ISO; biobank; business continuity planning; integrated biobank; population-based cohort study

Mesh:

Substances:

Year:  2019        PMID: 31130587     DOI: 10.1620/tjem.248.45

Source DB:  PubMed          Journal:  Tohoku J Exp Med        ISSN: 0040-8727            Impact factor:   1.848


  13 in total

1.  Identification of Dominant Transcripts in Oxidative Stress Response by a Full-Length Transcriptome Analysis.

Authors:  Akihito Otsuki; Yasunobu Okamura; Yuichi Aoki; Noriko Ishida; Kazuki Kumada; Naoko Minegishi; Fumiki Katsuoka; Kengo Kinoshita; Masayuki Yamamoto
Journal:  Mol Cell Biol       Date:  2021-01-25       Impact factor: 4.272

2.  Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes from a dataset of 3,552 Japanese whole genomes (3.5KJPNv2).

Authors:  Hideki Tokunaga; Keita Iida; Atsushi Hozawa; Soichi Ogishima; Yoh Watanabe; Shogo Shigeta; Muneaki Shimada; Yumi Yamaguchi-Kabata; Shu Tadaka; Fumiki Katsuoka; Shin Ito; Kazuki Kumada; Yohei Hamanaka; Nobuo Fuse; Kengo Kinoshita; Masayuki Yamamoto; Nobuo Yaegashi; Jun Yasuda
Journal:  PLoS One       Date:  2021-01-11       Impact factor: 3.240

3.  Returning individual genomic results to population-based cohort study participants with BRCA1/2 pathogenic variants.

Authors:  Kinuko Ohneda; Yohei Hamanaka; Hiroshi Kawame; Nobuo Fuse; Fuji Nagami; Yoichi Suzuki; Yumi Yamaguchi-Kabata; Muneaki Shimada; Atsushi Masamune; Yoko Aoki; Takanori Ishida; Masayuki Yamamoto
Journal:  Breast Cancer       Date:  2022-09-26       Impact factor: 3.307

4.  Importance of Rare DPYD Genetic Polymorphisms for 5-Fluorouracil Therapy in the Japanese Population.

Authors:  Eiji Hishinuma; Yoko Narita; Kai Obuchi; Akiko Ueda; Sakae Saito; Shu Tadaka; Kengo Kinoshita; Masamitsu Maekawa; Nariyasu Mano; Noriyasu Hirasawa; Masahiro Hiratsuka
Journal:  Front Pharmacol       Date:  2022-06-15       Impact factor: 5.988

5.  Oral Microbiome Analysis in Prospective Genome Cohort Studies of the Tohoku Medical Megabank Project.

Authors:  Sakae Saito; Yuichi Aoki; Toru Tamahara; Maki Goto; Hiroyuki Matsui; Junko Kawashima; Inaho Danjoh; Atsushi Hozawa; Shinichi Kuriyama; Yoichi Suzuki; Nobuo Fuse; Shigeo Kure; Riu Yamashita; Osamu Tanabe; Naoko Minegishi; Kengo Kinoshita; Akito Tsuboi; Ritsuko Shimizu; Masayuki Yamamoto
Journal:  Front Cell Infect Microbiol       Date:  2021-01-29       Impact factor: 5.293

6.  The return of individual genomic results to research participants: design and pilot study of Tohoku Medical Megabank Project.

Authors:  Hiroshi Kawame; Akimune Fukushima; Nobuo Fuse; Fuji Nagami; Yoichi Suzuki; Mika Sakurai-Yageta; Jun Yasuda; Yumi Yamaguchi-Kabata; Kengo Kinoshita; Soichi Ogishima; Takako Takai; Shinichi Kuriyama; Atsushi Hozawa; Naoki Nakaya; Tomohiro Nakamura; Naoko Minegishi; Junichi Sugawara; Kichiya Suzuki; Hiroaki Tomita; Akira Uruno; Tomoko Kobayashi; Yayoi Aizawa; Tomoharu Tokutomi; Kayono Yamamoto; Kinuko Ohneda; Shigeo Kure; Yoko Aoki; Hideki Katagiri; Yasushi Ishigaki; Shojiro Sawada; Makoto Sasaki; Masayuki Yamamoto
Journal:  J Hum Genet       Date:  2021-07-08       Impact factor: 3.172

7.  Identification of critical genetic variants associated with metabolic phenotypes of the Japanese population.

Authors:  Seizo Koshiba; Ikuko N Motoike; Daisuke Saigusa; Jin Inoue; Yuichi Aoki; Shu Tadaka; Matsuyuki Shirota; Fumiki Katsuoka; Gen Tamiya; Naoko Minegishi; Nobuo Fuse; Kengo Kinoshita; Masayuki Yamamoto
Journal:  Commun Biol       Date:  2020-11-11

8.  ALDH2 genotype modulates the association between alcohol consumption and AST/ALT ratio among middle-aged Japanese men: a genome-wide G × E interaction analysis.

Authors:  Yoichi Sutoh; Tsuyoshi Hachiya; Yuji Suzuki; Shohei Komaki; Hideki Ohmomo; Keisuke Kakisaka; Ting Wang; Yasuhiro Takikawa; Atsushi Shimizu
Journal:  Sci Rep       Date:  2020-10-01       Impact factor: 4.379

9.  Analysis of HLA-G long-read genomic sequences in mother-offspring pairs with preeclampsia.

Authors:  Ayako Nishizawa; Kazuki Kumada; Keiko Tateno; Maiko Wagata; Sakae Saito; Fumiki Katsuoka; Satoshi Mizuno; Soichi Ogishima; Masayuki Yamamoto; Jun Yasuda; Junichi Sugawara
Journal:  Sci Rep       Date:  2020-11-18       Impact factor: 4.379

10.  Wide-Targeted Metabolome Analysis Identifies Potential Biomarkers for Prognosis Prediction of Epithelial Ovarian Cancer.

Authors:  Eiji Hishinuma; Muneaki Shimada; Naomi Matsukawa; Daisuke Saigusa; Bin Li; Kei Kudo; Keita Tsuji; Shogo Shigeta; Hideki Tokunaga; Kazuki Kumada; Keigo Komine; Hidekazu Shirota; Yuichi Aoki; Ikuko N Motoike; Jun Yasuda; Kengo Kinoshita; Masayuki Yamamoto; Seizo Koshiba; Nobuo Yaegashi
Journal:  Toxins (Basel)       Date:  2021-06-30       Impact factor: 4.546

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