Literature DB >> 31126585

Site-Specific Binding of Non-Site-Specific Ions.

Shi-Jie Chen1.   

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Year:  2019        PMID： 31126585      PMCID： PMC6588825          DOI： 10.1016/j.bpj.2019.04.038

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  10 in total

1.  Understanding the kinetic mechanism of RNA single base pair formation.

Authors:  Xiaojun Xu; Tao Yu; Shi-Jie Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

2.  Quantitative analysis of monovalent counterion binding to random-sequence, double-stranded DNA using the replacement ion method.

Authors:  Earle Stellwagen; Qian Dong; Nancy C Stellwagen
Journal:  Biochemistry       Date:  2007-01-25       Impact factor: 3.162

Review 3.  RNA folding: thermodynamic and molecular descriptions of the roles of ions.

Authors:  David E Draper
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

4.  Ion Condensation onto Ribozyme Is Site Specific and Fold Dependent.

Authors:  Naoto Hori; Natalia A Denesyuk; D Thirumalai
Journal:  Biophys J       Date:  2019-05-11       Impact factor: 4.033

5.  Ion counting from explicit-solvent simulations and 3D-RISM.

Authors:  George M Giambaşu; Tyler Luchko; Daniel Herschlag; Darrin M York; David A Case
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

6.  Generalized Manning Condensation Model Captures the RNA Ion Atmosphere.

Authors:  Ryan L Hayes; Jeffrey K Noel; Ana Mandic; Paul C Whitford; Karissa Y Sanbonmatsu; Udayan Mohanty; José N Onuchic
Journal:  Phys Rev Lett       Date:  2015-06-26       Impact factor: 9.161

7.  Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids.

Authors:  Yu Bai; Max Greenfeld; Kevin J Travers; Vincent B Chu; Jan Lipfert; Sebastian Doniach; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2007-11-09       Impact factor: 15.419

Review 8.  A repulsive field: advances in the electrostatics of the ion atmosphere.

Authors:  Vincent B Chu; Yu Bai; Jan Lipfert; Daniel Herschlag; Sebastian Doniach
Journal:  Curr Opin Chem Biol       Date:  2008-12-08       Impact factor: 8.822

9.  Monte Carlo Tightly Bound Ion Model: Predicting Ion-Binding Properties of RNA with Ion Correlations and Fluctuations.

Authors:  Li-Zhen Sun; Shi-Jie Chen
Journal:  J Chem Theory Comput       Date:  2016-06-17       Impact factor: 6.006

10.  Metals induce transient folding and activation of the twister ribozyme.

Authors:  Subrata Panja; Boyang Hua; Diego Zegarra; Taekjip Ha; Sarah A Woodson
Journal:  Nat Chem Biol       Date:  2017-08-21       Impact factor: 15.040
  10 in total

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