Literature DB >> 31124089

Antibody-Driven Proximity Labeling in Fixed Tissues.

Daniel Z Bar1,2, Francis S Collins3.   

Abstract

Protein function often depends on assemblies and interactions. These show complex spatial and temporal organization within the cell. Analysis of protein function can be greatly assisted by grouping proteins with their neighbors. Rather than relying on affinity, proximity labeling targets proteins proximal to the target of interest. We describe a protocol for antibody-guided deposition of tags in fixed and permeabilized cell lines and primary human tissue samples.

Entities:  

Keywords:  Antibody; Biotin; HRP; Mass-spectrometry; Protein-protein interactions; Proximity labeling

Year:  2019        PMID: 31124089      PMCID: PMC6690065          DOI: 10.1007/978-1-4939-9537-0_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  18 in total

1.  Super-SILAC mix for quantitative proteomics of human tumor tissue.

Authors:  Tamar Geiger; Juergen Cox; Pawel Ostasiewicz; Jacek R Wisniewski; Matthias Mann
Journal:  Nat Methods       Date:  2010-04-04       Impact factor: 28.547

2.  A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC).

Authors:  Shao-En Ong; Matthias Mann
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

3.  Probing mammalian centrosome structure using BioID proximity-dependent biotinylation.

Authors:  Elif Nur Firat-Karalar; Tim Stearns
Journal:  Methods Cell Biol       Date:  2015-05-27       Impact factor: 1.441

4.  Probing nuclear pore complex architecture with proximity-dependent biotinylation.

Authors:  Dae In Kim; K C Birendra; Wenhong Zhu; Khatereh Motamedchaboki; Valérie Doye; Kyle J Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-03       Impact factor: 11.205

5.  Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking.

Authors:  Pornchai Kaewsapsak; David Michael Shechner; William Mallard; John L Rinn; Alice Y Ting
Journal:  Elife       Date:  2017-12-14       Impact factor: 8.140

6.  Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.

Authors:  Shao-En Ong; Blagoy Blagoev; Irina Kratchmarova; Dan Bach Kristensen; Hanno Steen; Akhilesh Pandey; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2002-05       Impact factor: 5.911

7.  Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins.

Authors:  Tamar Geiger; Anja Wehner; Christoph Schaab; Juergen Cox; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2012-01-25       Impact factor: 5.911

8.  Whole animal perfusion fixation for rodents.

Authors:  Gregory J Gage; Daryl R Kipke; William Shain
Journal:  J Vis Exp       Date:  2012-07-30       Impact factor: 1.355

9.  A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells.

Authors:  Kyle J Roux; Dae In Kim; Manfred Raida; Brian Burke
Journal:  J Cell Biol       Date:  2012-03-12       Impact factor: 10.539

10.  Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler.

Authors:  Yu Chen; Yang Zhang; Yuchuan Wang; Liguo Zhang; Eva K Brinkman; Stephen A Adam; Robert Goldman; Bas van Steensel; Jian Ma; Andrew S Belmont
Journal:  J Cell Biol       Date:  2018-08-28       Impact factor: 10.539

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