Literature DB >> 31122133

De novo discovery of antibody drugs - great promise demands scrutiny.

William J J Finlay1, Alexey A Lugovskoy1.   

Abstract

We live in an era of rapidly advancing computing capacity and algorithmic sophistication. "Big data" and "artificial intelligence"find progressively wider use in all spheres of human activity, including healthcare. A diverse array of computational technologies is being applied with increasing frequency to antibody drug research and development (R&D). Their successful applications are met with great interest due to the potential for accelerating and streamlining the antibody R&D process. While this excitement is very likely justified in the long term, it is less likely that the transition from the first use to routine practice will escape challenges that other new technologies had experienced before they began to blossom. This transition typically requires many cycles of iterative learning that rely on the deconstruction of the technology to understand its pitfalls and define vectors for optimization. The study by Vasquez et al. identifies a key obstacle to such learning: the lack of transparency regarding methodology in computational antibody design reports, which has the potential to mislead the community efforts.

Entities:  

Keywords:  In silico design; affinity maturation; antibody engineering; antibody therapeutics; computational methods; data integrity; de novo design; epitope; humanization; monoclonal antibody; paratope; specificity

Mesh:

Substances:

Year:  2019        PMID: 31122133      PMCID: PMC6601558          DOI: 10.1080/19420862.2019.1622926

Source DB:  PubMed          Journal:  MAbs        ISSN: 1942-0862            Impact factor:   5.857


  22 in total

1.  Negative design for improved therapeutic proteins.

Authors:  John R Desjarlais; Greg A Lazar
Journal:  Trends Biotechnol       Date:  2003-10       Impact factor: 19.536

Review 2.  Structure-Guided Design of Antibodies.

Authors:  Justin A Caravella; Deping Wang; Scott M Glaser; Alexey Lugovskoy
Journal:  Curr Comput Aided Drug Des       Date:  2010       Impact factor: 1.606

3.  Affinity enhancement of an in vivo matured therapeutic antibody using structure-based computational design.

Authors:  Louis A Clark; P Ann Boriack-Sjodin; John Eldredge; Christopher Fitch; Bethany Friedman; Karl J M Hanf; Matthew Jarpe; Stefano F Liparoto; You Li; Alexey Lugovskoy; Stephan Miller; Mia Rushe; Woody Sherman; Kenneth Simon; Herman Van Vlijmen
Journal:  Protein Sci       Date:  2006-04-05       Impact factor: 6.725

4.  Understanding the role of cross-arm binding efficiency in the activity of monoclonal and multispecific therapeutic antibodies.

Authors:  Brian D Harms; Jeffrey D Kearns; Sergio Iadevaia; Alexey A Lugovskoy
Journal:  Methods       Date:  2013-07-18       Impact factor: 3.608

5.  Establishing in vitro in vivo correlations to screen monoclonal antibodies for physicochemical properties related to favorable human pharmacokinetics.

Authors:  Lindsay B Avery; Jason Wade; Mengmeng Wang; Amy Tam; Amy King; Nicole Piche-Nicholas; Mania S Kavosi; Steve Penn; David Cirelli; Jeffrey C Kurz; Minlei Zhang; Orla Cunningham; Rhys Jones; Brian J Fennell; Barry McDonnell; Paul Sakorafas; James Apgar; William J Finlay; Laura Lin; Laird Bloom; Denise M O'Hara
Journal:  MAbs       Date:  2018-01-29       Impact factor: 5.857

6.  Computational Design of Epitope-Specific Functional Antibodies.

Authors:  Guy Nimrod; Sharon Fischman; Mark Austin; Asael Herman; Feenagh Keyes; Olga Leiderman; David Hargreaves; Marek Strajbl; Jason Breed; Shelley Klompus; Kevin Minton; Jennifer Spooner; Andrew Buchanan; Tristan J Vaughan; Yanay Ofran
Journal:  Cell Rep       Date:  2018-11-20       Impact factor: 9.423

7.  Functional human antibody CDR fusions as long-acting therapeutic endocrine agonists.

Authors:  Tao Liu; Yong Zhang; Yan Liu; Ying Wang; Haiqun Jia; Mingchao Kang; Xiaozhou Luo; Dawna Caballero; Jose Gonzalez; Lance Sherwood; Vanessa Nunez; Danling Wang; Ashley Woods; Peter G Schultz; Feng Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-20       Impact factor: 11.205

8.  Monoclonal antibody therapeutic trials in seven patients with T-cell lymphoma.

Authors:  R A Miller; A R Oseroff; P T Stratte; R Levy
Journal:  Blood       Date:  1983-11       Impact factor: 22.113

9.  BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers.

Authors:  Maxim V Shapovalov; Qiang Wang; Qifang Xu; Mark Andrake; Roland L Dunbrack
Journal:  PLoS One       Date:  2014-06-12       Impact factor: 3.240

10.  Anti-PD1 'SHR-1210' aberrantly targets pro-angiogenic receptors and this polyspecificity can be ablated by paratope refinement.

Authors:  William J J Finlay; James E Coleman; Jonathan S Edwards; Kevin S Johnson
Journal:  MAbs       Date:  2018-12-12       Impact factor: 5.857

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  1 in total

Review 1.  Moving beyond Titers.

Authors:  Benjamin D Brooks; Alexander Beland; Gabriel Aguero; Nicholas Taylor; Francina D Towne
Journal:  Vaccines (Basel)       Date:  2022-04-26
  1 in total

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