Literature DB >> 31119685

Recent trends in CRISPR-Cas system: genome, epigenome, and transcriptome editing and CRISPR delivery systems.

Taegeun Bae1, Junseok W Hur2, Dokyoung Kim3,4,5,6, Junho K Hur7,8.   

Abstract

BACKGROUND: The CRISPR-Cas systems have emerged as a robust genome editing tool useful in various fields of research. With the discovery and development of the orthologous CRISPR-Cas systems, their genome editing efficiency have improved.
OBJECTIVE: In this review, we aim to present the recent developments and applications of the CRISPR-Cas systems.
METHODS: First, we introduce how the advancements of CRISPR technology enabled genome editing to single base precision. Then, we discuss the CRISPR based methods for targeted transcriptional regulation, epigenome editing, and RNA editing. Finally, we review the CRISPR delivery systems highlighting recent attempts to integrate nanotechnology to develop novel CRISPR delivery modalities.
CONCLUSION: Here, we review the recent trends in CRISPR-based biotechnologies, encompassing genome editing, epigenome regulation and direct RNA targeting and provide an overview of methods employed for CRISPR delivery with an emphasis on the most recent nanotechnology-based delivery strategies. We anticipate that the development of CRISPR based technology will continue to explore novel methods.

Keywords:  CRISPR-Cas system; Delivery; Epigenetics; Genome editing; RNA editing

Mesh:

Year:  2019        PMID: 31119685     DOI: 10.1007/s13258-019-00830-w

Source DB:  PubMed          Journal:  Genes Genomics        ISSN: 1976-9571            Impact factor:   1.839


  49 in total

1.  Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system.

Authors:  Bernd Zetsche; Jonathan S Gootenberg; Omar O Abudayyeh; Ian M Slaymaker; Kira S Makarova; Patrick Essletzbichler; Sara E Volz; Julia Joung; John van der Oost; Aviv Regev; Eugene V Koonin; Feng Zhang
Journal:  Cell       Date:  2015-09-25       Impact factor: 41.582

2.  Cas9 effector-mediated regulation of transcription and differentiation in human pluripotent stem cells.

Authors:  Nicola A Kearns; Ryan M J Genga; Metewo S Enuameh; Manuel Garber; Scot A Wolfe; René Maehr
Journal:  Development       Date:  2014-01       Impact factor: 6.868

3.  Structure and Engineering of Francisella novicida Cas9.

Authors:  Hisato Hirano; Jonathan S Gootenberg; Takuro Horii; Omar O Abudayyeh; Mika Kimura; Patrick D Hsu; Takanori Nakane; Ryuichiro Ishitani; Izuho Hatada; Feng Zhang; Hiroshi Nishimasu; Osamu Nureki
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

4.  A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

Authors:  Martin Jinek; Krzysztof Chylinski; Ines Fonfara; Michael Hauer; Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2012-06-28       Impact factor: 47.728

5.  Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection.

Authors:  Alexandra East-Seletsky; Mitchell R O'Connell; Spencer C Knight; David Burstein; Jamie H D Cate; Robert Tjian; Jennifer A Doudna
Journal:  Nature       Date:  2016-09-26       Impact factor: 49.962

6.  RNA-guided human genome engineering via Cas9.

Authors:  Prashant Mali; Luhan Yang; Kevin M Esvelt; John Aach; Marc Guell; James E DiCarlo; Julie E Norville; George M Church
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

7.  RNA targeting with CRISPR-Cas13.

Authors:  Omar O Abudayyeh; Jonathan S Gootenberg; Patrick Essletzbichler; Shuo Han; Julia Joung; Joseph J Belanto; Vanessa Verdine; David B T Cox; Max J Kellner; Aviv Regev; Eric S Lander; Daniel F Voytas; Alice Y Ting; Feng Zhang
Journal:  Nature       Date:  2017-10-04       Impact factor: 49.962

8.  Highly efficient Cas9-mediated transcriptional programming.

Authors:  Alejandro Chavez; Jonathan Scheiman; Suhani Vora; Benjamin W Pruitt; Marcelle Tuttle; Eswar P R Iyer; Shuailiang Lin; Samira Kiani; Christopher D Guzman; Daniel J Wiegand; Dmitry Ter-Ovanesyan; Jonathan L Braff; Noah Davidsohn; Benjamin E Housden; Norbert Perrimon; Ron Weiss; John Aach; James J Collins; George M Church
Journal:  Nat Methods       Date:  2015-03-02       Impact factor: 28.547

9.  Rapid and efficient CRISPR/Cas9 gene inactivation in human neurons during human pluripotent stem cell differentiation and direct reprogramming.

Authors:  Alicia Rubio; Mirko Luoni; Serena G Giannelli; Isabella Radice; Angelo Iannielli; Cinzia Cancellieri; Claudia Di Berardino; Giulia Regalia; Giovanna Lazzari; Andrea Menegon; Stefano Taverna; Vania Broccoli
Journal:  Sci Rep       Date:  2016-11-18       Impact factor: 4.379

10.  Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage.

Authors:  Alexis C Komor; Yongjoo B Kim; Michael S Packer; John A Zuris; David R Liu
Journal:  Nature       Date:  2016-04-20       Impact factor: 49.962

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  5 in total

1.  Heat-Triggered Remote Control of CRISPR-dCas9 for Tunable Transcriptional Modulation.

Authors:  Lena Gamboa; Erick V Phung; Haoxin Li; Jared P Meyers; Anna C Hart; Ian C Miller; Gabriel A Kwong
Journal:  ACS Chem Biol       Date:  2020-01-13       Impact factor: 5.100

2.  Improved LbCas12a variants with altered PAM specificities further broaden the genome targeting range of Cas12a nucleases.

Authors:  Eszter Tóth; Éva Varga; Péter István Kulcsár; Virág Kocsis-Jutka; Sarah Laura Krausz; Antal Nyeste; Zsombor Welker; Krisztina Huszár; Zoltán Ligeti; András Tálas; Ervin Welker
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

3.  KRAB-Induced Heterochromatin Effectively Silences PLOD2 Gene Expression in Somatic Cells and is Resilient to TGFβ1 Activation.

Authors:  Rutger A F Gjaltema; Désirée Goubert; Christian Huisman; Consuelo Del Pilar García Tobilla; Mihály Koncz; Pytrick G Jellema; Dandan Wu; Uilke Brouwer; Antal Kiss; Pernette J Verschure; Ruud A Bank; Marianne G Rots
Journal:  Int J Mol Sci       Date:  2020-05-21       Impact factor: 5.923

Review 4.  In Search of Molecular Markers for Cerebellar Neurons.

Authors:  Wing Yip Tam; Xia Wang; Andy S K Cheng; Kwok-Kuen Cheung
Journal:  Int J Mol Sci       Date:  2021-02-12       Impact factor: 5.923

Review 5.  Synthetic immunity by remote control.

Authors:  Lena Gamboa; Ali H Zamat; Gabriel A Kwong
Journal:  Theranostics       Date:  2020-02-19       Impact factor: 11.556

  5 in total

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