Literature DB >> 31117391

Eight-Letter DNA.

Vivian T Dien1, Matthew Holcomb1, Floyd E Romesberg1.   

Abstract

Steve Benner and collaborators have recently reported an analysis of DNA containing eight nucleotide letters, the four natural letters (dG, dC, dA, and dT) and four additional letters (dP, dZ, dS, and dB). Their analysis demonstrates that the additional letters do not perturb the structure or stability of the base pairs formed between the natural letters and, remarkably, that the new base pairs, dP-dZ and dS-dB, behave virtually identically to the natural base pairs. This unprecedented result convincingly demonstrates that the thermodynamic and structural behavior previously thought to be the purview of only natural DNA is in fact not unique and can be imparted to suitably designed synthetic components. In addition, the first evidence that the eight-letter DNA can be transcribed into RNA by a mutant RNA polymerase is presented, paving the way for the transfer of more information from one biopolymer to another. Along with others working to develop unnatural DNA base pairs for both in vitro and in vivo applications, this work represents an important step toward the expansion of the genetic alphabet, a central goal of synthetic biology, and has profound implications for our understanding of the molecules and forces that can make life possible.

Entities:  

Year:  2019        PMID: 31117391      PMCID: PMC6676896          DOI: 10.1021/acs.biochem.9b00274

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Aptamers against Cells Overexpressing Glypican 3 from Expanded Genetic Systems Combined with Cell Engineering and Laboratory Evolution.

Authors:  Liqin Zhang; Zunyi Yang; Thu Le Trinh; I-Ting Teng; Sai Wang; Kevin M Bradley; Shuichi Hoshika; Qunfeng Wu; Sena Cansiz; Diane J Rowold; Christopher McLendon; Myong-Sang Kim; Yuan Wu; Cheng Cui; Yuan Liu; Weijia Hou; Kimberly Stewart; Shuo Wan; Chen Liu; Steven A Benner; Weihong Tan
Journal:  Angew Chem Int Ed Engl       Date:  2016-09-07       Impact factor: 15.336

2.  High-throughput multiplexed xMAP Luminex array panel for detection of twenty two medically important mosquito-borne arboviruses based on innovations in synthetic biology.

Authors:  Lyudmyla G Glushakova; Andrea Bradley; Kevin M Bradley; Barry W Alto; Shuichi Hoshika; Daniel Hutter; Nidhi Sharma; Zunyi Yang; Myong-Jung Kim; Steven A Benner
Journal:  J Virol Methods       Date:  2015-02-11       Impact factor: 2.014

3.  Structural basis for a six nucleotide genetic alphabet.

Authors:  Millie M Georgiadis; Isha Singh; Whitney F Kellett; Shuichi Hoshika; Steven A Benner; Nigel G J Richards
Journal:  J Am Chem Soc       Date:  2015-05-18       Impact factor: 15.419

4.  Amplification, mutation, and sequencing of a six-letter synthetic genetic system.

Authors:  Zunyi Yang; Fei Chen; J Brian Alvarado; Steven A Benner
Journal:  J Am Chem Soc       Date:  2011-09-06       Impact factor: 15.419

5.  A Crystal Structure of a Functional RNA Molecule Containing an Artificial Nucleobase Pair.

Authors:  Armando R Hernandez; Yaming Shao; Shuichi Hoshika; Zunyi Yang; Sandip A Shelke; Julien Herrou; Hyo-Joong Kim; Myong-Jung Kim; Joseph A Piccirilli; Steven A Benner
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-16       Impact factor: 15.336

6.  2'-deoxy-1-methylpseudocytidine, a stable analog of 2'-deoxy-5-methylisocytidine.

Authors:  Hyo-Joong Kim; Nicole A Leal; Steven A Benner
Journal:  Bioorg Med Chem       Date:  2009-03-27       Impact factor: 3.641

7.  Artificial genetic systems: exploiting the "aromaticity" formalism to improve the tautomeric ratio for isoguanosine derivatives.

Authors:  Theodore A Martinot; Steven A Benner
Journal:  J Org Chem       Date:  2004-05-28       Impact factor: 4.354

8.  Generation of high-affinity DNA aptamers using an expanded genetic alphabet.

Authors:  Michiko Kimoto; Rie Yamashige; Ken-ichiro Matsunaga; Shigeyuki Yokoyama; Ichiro Hirao
Journal:  Nat Biotechnol       Date:  2013-04-07       Impact factor: 54.908

9.  Detecting respiratory viral RNA using expanded genetic alphabets and self-avoiding DNA.

Authors:  Lyudmyla G Glushakova; Nidhi Sharma; Shuichi Hoshika; Andrea C Bradley; Kevin M Bradley; Zunyi Yang; Steven A Benner
Journal:  Anal Biochem       Date:  2015-08-21       Impact factor: 3.365

10.  Artificially expanded genetic information system: a new base pair with an alternative hydrogen bonding pattern.

Authors:  Zunyi Yang; Daniel Hutter; Pinpin Sheng; A Michael Sismour; Steven A Benner
Journal:  Nucleic Acids Res       Date:  2006-10-29       Impact factor: 16.971

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  5 in total

1.  Evolution of abiotic cubane chemistries in a nucleic acid aptamer allows selective recognition of a malaria biomarker.

Authors:  Yee-Wai Cheung; Pascal Röthlisberger; Ariel E Mechaly; Patrick Weber; Fabienne Levi-Acobas; Young Lo; Alvin W C Wong; Andrew B Kinghorn; Ahmed Haouz; G Paul Savage; Marcel Hollenstein; Julian A Tanner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-06       Impact factor: 11.205

2.  Exploring the Influence of Intermolecular Interactions in Prebiotic Chemistry Using Laser Spectroscopy and Calculations.

Authors:  Ander Camiruaga; Imanol Usabiaga; Camilla Calabrese; Iker Lamas; Francisco J Basterretxea; José A Fernández
Journal:  Chemistry       Date:  2021-12-02       Impact factor: 5.020

3.  Genetic Code Expansion Facilitates Position-Selective Labeling of RNA for Biophysical Studies.

Authors:  Andreas Hegelein; Diana Müller; Sylvester Größl; Michael Göbel; Martin Hengesbach; Harald Schwalbe
Journal:  Chemistry       Date:  2020-01-21       Impact factor: 5.236

Review 4.  Genetic Engineering and Synthetic Genomics in Yeast to Understand Life and Boost Biotechnology.

Authors:  Daniel Schindler
Journal:  Bioengineering (Basel)       Date:  2020-10-29

5.  Modified nucleoside triphosphates in bacterial research for in vitro and live-cell applications.

Authors:  Adeline Espinasse; Hannah K Lembke; Angela A Cao; Erin E Carlson
Journal:  RSC Chem Biol       Date:  2020-09-14
  5 in total

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