Literature DB >> 3111376

Reactions of O-acyl-L-serines with tryptophanase, tyrosine phenol-lyase, and tryptophan synthase.

R S Phillips.   

Abstract

The reactions of tryptophanase, tyrosine phenol-lyase, and tryptophan synthase with a new class of substrates, the O-acyl-L-serines, have been examined. A method for preparation of O-benzoyl-L-serine in high yield from tert.-butyloxycarbonyl (tBoc)-L-serine has been developed. Reaction of the cesium salt of tBoc-L-serine with benzyl bromide in dimethylformamide gives tBoc-L-serine benzyl ester in excellent yield. Acylation with benzoyl chloride and triethylamine in acetonitrile followed by hydrogenolysis with 10% palladium on carbon in trifluoroacetic acid gives O-benzoyl-L-serine, isolated as the hydrochloride salt. O-Benzoyl-L-serine is a good substrate for beta-elimination or beta-substitution reactions catalyzed by both tryptophanase and tyrosine phenol-lyase, with Vmax values 5- to 6-fold those of the physiological substrates and comparable to that of S-(o-nitrophenyl)-L-cysteine. Unexpectedly, O-acetyl-L-serine is a very poor substrate for these enzymes, with Vmax values about 5% of those of the physiological substrates. Both O-acyl-L-serines are poor substrates for tryptophan synthase, measured either by the synthesis of 5-fluoro-L-tryptophan from 5-fluoroindole and L-serine catalyzed by the intact alpha 2 beta 2 subunit or by the beta-elimination reaction catalyzed by the isolated beta 2 subunit. With all three enzymes, the elimination of benzoate appears to be irreversible. These results suggest that the binding energy from the aromatic ring of O-benzoyl-L-serine is used to lower the transition-state barrier for the elimination reactions catalyzed by tryptophanase and tyrosine phenol-lyase. Our findings support the suggestion (M. N. Kazarinoff and E. E. Snell (1980) J. Biol. Chem. 255, 6228-6233) that tryptophanase undergoes a conformational change during catalysis and suggest that tyrosine phenol-lyase also may undergo a conformational change during catalysis.

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Year:  1987        PMID: 3111376     DOI: 10.1016/0003-9861(87)90450-4

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  8 in total

1.  Tyrosine phenol-lyase: the role of the coenzyme-binding residue Ser-254 in catalysis.

Authors:  A I Papisova; N P Bazhulina; N G Faleev; T V Demidkina
Journal:  Dokl Biochem Biophys       Date:  2003 Jul-Aug       Impact factor: 0.788

2.  Threonine-124 and phenylalanine-448 in Citrobacter freundii tyrosine phenol-lyase are necessary for activity with L-tyrosine.

Authors:  Tatyana V Demidkina; Maria V Barbolina; Nicolai G Faleev; Bakthavatsalam Sundararaju; Paul D Gollnick; Robert S Phillips
Journal:  Biochem J       Date:  2002-05-01       Impact factor: 3.857

3.  M379A Mutant Tyrosine Phenol-lyase from Citrobacter freundii Has Altered Conformational Dynamics.

Authors:  Robert S Phillips; Benjamin Jones; Sarah Nash
Journal:  Chembiochem       Date:  2022-05-24       Impact factor: 3.461

4.  Tyrosine phenol-lyase and tryptophan indole-lyase encapsulated in wet nanoporous silica gels: Selective stabilization of tertiary conformations.

Authors:  Barbara Pioselli; Stefano Bettati; Tatyana V Demidkina; Lyudmila N Zakomirdina; Robert S Phillips; Andrea Mozzarelli
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

5.  Crystallographic snapshots of tyrosine phenol-lyase show that substrate strain plays a role in C-C bond cleavage.

Authors:  Dalibor Milić; Tatyana V Demidkina; Nicolai G Faleev; Robert S Phillips; Dubravka Matković-Čalogović; Alfred A Antson
Journal:  J Am Chem Soc       Date:  2011-09-27       Impact factor: 15.419

6.  The Catalytic Mechanisms of the Reactions between Tryptophan Indole-Lyase and Nonstandard Substrates: The Role of the Ionic State of the Catalytic Group Accepting the Cα Proton of the Substrate.

Authors:  N G Faleev; M A Tsvetikova; O I Gogoleva; V V Kulikova; S V Revtovich; K A Kochetkov
Journal:  Acta Naturae       Date:  2019 Jul-Sep       Impact factor: 1.845

7.  SGLT-1-specific inhibition ameliorates renal failure and alters the gut microbial community in mice with adenine-induced renal failure.

Authors:  Hsin-Jung Ho; Koichi Kikuchi; Daiki Oikawa; Shun Watanabe; Yoshitomi Kanemitsu; Daisuke Saigusa; Ryota Kujirai; Wakako Ikeda-Ohtsubo; Mariko Ichijo; Yukako Akiyama; Yuichi Aoki; Eikan Mishima; Yoshiaki Ogata; Yoshitsugu Oikawa; Tetsuro Matsuhashi; Takafumi Toyohara; Chitose Suzuki; Takehiro Suzuki; Nariyasu Mano; Yoshiteru Kagawa; Yuji Owada; Takane Katayama; Toru Nakayama; Yoshihisa Tomioka; Takaaki Abe
Journal:  Physiol Rep       Date:  2021-12

8.  Insights into the catalytic mechanism of tyrosine phenol-lyase from X-ray structures of quinonoid intermediates.

Authors:  Dalibor Milić; Tatyana V Demidkina; Nicolai G Faleev; Dubravka Matković-Calogović; Alfred A Antson
Journal:  J Biol Chem       Date:  2008-08-20       Impact factor: 5.157

  8 in total

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