Literature DB >> 31111767

Future challenges with DNA-encoded chemical libraries in the drug discovery domain.

Guixian Zhao1, Yiran Huang2, Yu Zhou2,3, Yizhou Li1, Xiaoyu Li2.   

Abstract

Introduction: DNA-encoded chemical libraries (DELs) have come of age and emerged to become a powerful technology platform for ligand discovery in biomedical research and drug discovery. Today, DELs have been widely adopted in the pharmaceutical industry and employed in drug discovery programs worldwide. DELs are capable of interrogating drug targets with an extremely large number of compounds highly efficiently. Area covered: In this review, the authors introduce the history of DELs and provide an overview of the major technological components, including encoding methods, library synthesis, chemistry, selection methods, hit deconvolution strategy, and post-selection data analysis. A brief update on the hit compounds recently discovered from DEL selections against drug targets is also provided. Finally, the authors discuss their views on the present challenges and future directions for the development and application of DELs in drug discovery. Expert opinion: DELs have provided great opportunities for lead compound discovery at an unprecedented scale and efficiency in drug discovery. The key to the future success of DELs as true discovery modalities, rather than just 'a way to make many compounds,' is to go beyond physical binding to functional or even phenotypic assays with the capability to probe the biological system.

Keywords:  DNA-encoded chemical library; combinatorial chemistry; drug discovery; drug targets; high throughput screening

Mesh:

Substances:

Year:  2019        PMID: 31111767     DOI: 10.1080/17460441.2019.1614559

Source DB:  PubMed          Journal:  Expert Opin Drug Discov        ISSN: 1746-0441            Impact factor:   6.098


  15 in total

1.  Stereo- and regiodefined DNA-encoded chemical libraries enable efficient tumour-targeting applications.

Authors:  Nicholas Favalli; Gabriele Bassi; Christian Pellegrino; Jacopo Millul; Roberto De Luca; Samuele Cazzamalli; Su Yang; Anika Trenner; Nour L Mozaffari; Renier Myburgh; Mustafa Moroglu; Stuart J Conway; Alessandro A Sartori; Markus G Manz; Richard A Lerner; Peter K Vogt; Jörg Scheuermann; Dario Neri
Journal:  Nat Chem       Date:  2021-04-08       Impact factor: 24.427

2.  RASS-Enabled S/P-C and S-N Bond Formation for DEL Synthesis.

Authors:  Dillon T Flood; Xuejing Zhang; Xiang Fu; Zhenxiang Zhao; Shota Asai; Brittany B Sanchez; Emily J Sturgell; Julien C Vantourout; Paul Richardson; Mark E Flanagan; David W Piotrowski; Dominik K Kölmel; Jinqiao Wan; Mei-Hsuan Tsai; Jason S Chen; Phil S Baran; Philip E Dawson
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-11       Impact factor: 15.336

3.  Multiplexed Small-Molecule-Ligand Binding Assays by Affinity Labeling and DNA Sequence Analysis.

Authors:  Bo Cai; Casey J Krusemark
Journal:  Angew Chem Int Ed Engl       Date:  2021-12-03       Impact factor: 15.336

4.  Nonlinear manipulation and analysis of large DNA datasets.

Authors:  Meiying Cui; Xueping Zhao; Francesco V Reddavide; Michelle Patino Gaillez; Stephan Heiden; Luca Mannocci; Michael Thompson; Yixin Zhang
Journal:  Nucleic Acids Res       Date:  2022-08-10       Impact factor: 19.160

5.  DNA-Compatible Suzuki-Miyaura Cross-Coupling Reaction of Aryl Iodides With (Hetero)Aryl Boronic Acids for DNA-Encoded Libraries.

Authors:  Vijay Kumar Siripuram; Yashoda Krishna Sunkari; Thu-Lan Nguyen; Marc Flajolet
Journal:  Front Chem       Date:  2022-06-14       Impact factor: 5.545

6.  Multifunctional Building Blocks Compatible with Photoredox-Mediated Alkylation for DNA-Encoded Library Synthesis.

Authors:  Shorouk O Badir; Jaehoon Sim; Katelyn Billings; Adam Csakai; Xuange Zhang; Weizhe Dong; Gary A Molander
Journal:  Org Lett       Date:  2020-01-15       Impact factor: 6.005

7.  Selection of DNA-encoded chemical libraries against endogenous membrane proteins on live cells.

Authors:  Yiran Huang; Ling Meng; Qigui Nie; Yu Zhou; Langdong Chen; Shilian Yang; Yi Man Eva Fung; Xiaomeng Li; Cen Huang; Yan Cao; Yizhou Li; Xiaoyu Li
Journal:  Nat Chem       Date:  2020-12-21       Impact factor: 24.427

8.  Ultra-large chemical libraries for the discovery of high-affinity peptide binders.

Authors:  Anthony J Quartararo; Zachary P Gates; Bente A Somsen; Nina Hartrampf; Xiyun Ye; Arisa Shimada; Yasuhiro Kajihara; Christian Ottmann; Bradley L Pentelute
Journal:  Nat Commun       Date:  2020-06-23       Impact factor: 14.919

9.  Merging C(sp3)-H activation with DNA-encoding.

Authors:  Zhoulong Fan; Shuai Zhao; Tao Liu; Peng-Xiang Shen; Zi-Ning Cui; Zhe Zhuang; Qian Shao; Jason S Chen; Anokha S Ratnayake; Mark E Flanagan; Dominik K Kölmel; David W Piotrowski; Paul Richardson; Jin-Quan Yu
Journal:  Chem Sci       Date:  2020-09-07       Impact factor: 9.825

10.  A Single-Stranded DNA-Encoded Chemical Library Based on a Stereoisomeric Scaffold Enables Ligand Discovery by Modular Assembly of Building Blocks.

Authors:  Gabriele Bassi; Nicholas Favalli; Miriam Vuk; Marco Catalano; Adriano Martinelli; Anika Trenner; Antonio Porro; Su Yang; Chuin Lean Tham; Mustafa Moroglu; Wyatt W Yue; Stuart J Conway; Peter K Vogt; Alessandro A Sartori; Jörg Scheuermann; Dario Neri
Journal:  Adv Sci (Weinh)       Date:  2020-10-14       Impact factor: 16.806

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