Literature DB >> 31110020

Microbial biospherics: The experimental study of ecosystem function and evolution.

Matthias C Rillig1,2, Janis Antonovics3.   

Abstract

Awareness that our planet is a self-supporting biosphere with sunlight as its major source of energy for life has resulted in a long-term historical fascination with the workings of self-supporting ecological systems. However, the studies of such systems have never entered the canon of ecological or evolutionary tools and instead, have led a fringe existence connected to life support system engineering and space travel. We here introduce a framework for a renaissance in biospherics based on the study of matter-closed, energy-open ecosystems at a microbial level (microbial biospherics). Recent progress in genomics, robotics, and sensor technology makes the study of closed systems now much more tractable than in the past, and we argue that the time has come to emancipate the study of closed systems from this fringe context and bring them into a mainstream approach for studying ecosystem processes. By permitting highly replicated long-term studies, especially on predetermined and simplified systems, microbial biospheres offer the opportunity to test and develop strong hypotheses about ecosystem function and the ecological and evolutionary determinants of long-term system failure or persistence. Unlike many sciences, ecosystem ecology has never fully embraced a reductionist approach and has remained focused on the natural world in all its complexity. We argue that a reductionist approach to ecosystem ecology, using microbial biospheres, based on a combination of theory and the replicated study of much simpler self-enclosed microsystems could pay huge dividends.

Entities:  

Keywords:  biogeochemistry; biospherics; matter-closed systems; self-sustaining systems

Year:  2019        PMID: 31110020      PMCID: PMC6561262          DOI: 10.1073/pnas.1904326116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

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Review 3.  Diffusion in biofilms.

Authors:  Philip S Stewart
Journal:  J Bacteriol       Date:  2003-03       Impact factor: 3.490

4.  Contingency and statistical laws in replicate microbial closed ecosystems.

Authors:  Doeke R Hekstra; Stanislas Leibler
Journal:  Cell       Date:  2012-05-25       Impact factor: 41.582

5.  Artificial selection of simulated microbial ecosystems.

Authors:  Hywel T P Williams; Timothy M Lenton
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-21       Impact factor: 11.205

6.  Environmental genomics reveals a single-species ecosystem deep within Earth.

Authors:  Dylan Chivian; Eoin L Brodie; Eric J Alm; David E Culley; Paramvir S Dehal; Todd Z DeSantis; Thomas M Gihring; Alla Lapidus; Li-Hung Lin; Stephen R Lowry; Duane P Moser; Paul M Richardson; Gordon Southam; Greg Wanger; Lisa M Pratt; Gary L Andersen; Terry C Hazen; Fred J Brockman; Adam P Arkin; Tullis C Onstott
Journal:  Science       Date:  2008-10-10       Impact factor: 47.728

7.  Nutrient co-limitation of primary producer communities.

Authors:  W Stanley Harpole; Jacqueline T Ngai; Elsa E Cleland; Eric W Seabloom; Elizabeth T Borer; Matthew E S Bracken; James J Elser; Daniel S Gruner; Helmut Hillebrand; Jonathan B Shurin; Jennifer E Smith
Journal:  Ecol Lett       Date:  2011-07-12       Impact factor: 9.492

8.  Local adaptation in Trinidadian guppies alters ecosystem processes.

Authors:  Ronald D Bassar; Michael C Marshall; Andrés López-Sepulcre; Eugenia Zandonà; Sonya K Auer; Joseph Travis; Catherine M Pringle; Alexander S Flecker; Steven A Thomas; Douglas F Fraser; David N Reznick
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-04       Impact factor: 11.205

9.  Global analysis of nitrogen and phosphorus limitation of primary producers in freshwater, marine and terrestrial ecosystems.

Authors:  James J Elser; Matthew E S Bracken; Elsa E Cleland; Daniel S Gruner; W Stanley Harpole; Helmut Hillebrand; Jacqueline T Ngai; Eric W Seabloom; Jonathan B Shurin; Jennifer E Smith
Journal:  Ecol Lett       Date:  2007-10-06       Impact factor: 9.492

10.  Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli.

Authors:  Zachary D Blount; Christina Z Borland; Richard E Lenski
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-04       Impact factor: 11.205

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  5 in total

1.  Microbial self-recycling and biospherics.

Authors:  Matthias C Rillig; Janis Antonovics; India Mansour
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-14       Impact factor: 11.205

2.  Synthetic Biology for Terraformation Lessons from Mars, Earth, and the Microbiome.

Authors:  Nuria Conde-Pueyo; Blai Vidiella; Josep Sardanyés; Miguel Berdugo; Fernando T Maestre; Victor De Lorenzo; Ricard Solé
Journal:  Life (Basel)       Date:  2020-02-09

3.  Microbial population dynamics and evolutionary outcomes under extreme energy limitation.

Authors:  William R Shoemaker; Stuart E Jones; Mario E Muscarella; Megan G Behringer; Brent K Lehmkuhl; Jay T Lennon
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-17       Impact factor: 12.779

4.  Closed microbial communities self-organize to persistently cycle carbon.

Authors:  Luis Miguel de Jesús Astacioa; Kaumudi H Prabhakara; Zeqian Li; Harry Mickalide; Seppe Kuehn
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-09       Impact factor: 11.205

Review 5.  An ensemble approach to the structure-function problem in microbial communities.

Authors:  Chandana Gopalakrishnappa; Karna Gowda; Kaumudi H Prabhakara; Seppe Kuehn
Journal:  iScience       Date:  2022-01-11
  5 in total

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