Literature DB >> 31102357

[New inhibitors targeting bacterial RNA polymerase].

Jing Shi1, Yu Feng1,2.   

Abstract

Rifamycins, a group of bacterial RNA polymerase inhibitors, are the firstline antimicrobial drugs to treat tuberculosis. In light of the emergence of rifamycinresistant bacteria, development of new RNA polymerase inhibitors that kill rifamycinresistant bacteria with high bioavailability is urgent. Structural analysis of bacterial RNA polymerase in complex with inhibitors by crystallography and cryo-EM indicates that RNA polymerase inhibitors function through five distinct molecular mechanisms:inhibition of the extension of short RNA; competition with substrates; inhibition of the conformational change of the'bridge helix'; inhibition of clamp opening;inhibition of clamp closure. This article reviews the research progress of these five groups of RNA polymerase inhibitors to provide references for the modification of existing RNA polymerase inhibitors and the discovery of new RNA polymerase inhibitors.

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Year:  2019        PMID: 31102357      PMCID: PMC8800650          DOI: 10.3785/j.issn.1008-9292.2019.02.08

Source DB:  PubMed          Journal:  Zhejiang Da Xue Xue Bao Yi Xue Ban        ISSN: 1008-9292


  39 in total

Review 1.  Fidaxomicin: the newest addition to the armamentarium against Clostridium difficile infections.

Authors:  Jason W Lancaster; S James Matthews
Journal:  Clin Ther       Date:  2012-01       Impact factor: 3.393

2.  Total synthesis of (+)-sorangicin A.

Authors:  Amos B Smith; Shuzhi Dong; Jehrod B Brenneman; Richard J Fox
Journal:  J Am Chem Soc       Date:  2009-09-02       Impact factor: 15.419

Review 3.  Fidaxomicin: a novel macrocyclic antibiotic approved for treatment of Clostridium difficile infection.

Authors:  Anilrudh A Venugopal; Stuart Johnson
Journal:  Clin Infect Dis       Date:  2011-12-07       Impact factor: 9.079

4.  Structural, functional, and genetic analysis of sorangicin inhibition of bacterial RNA polymerase.

Authors:  Elizabeth A Campbell; Olga Pavlova; Nikolay Zenkin; Fred Leon; Herbert Irschik; Rolf Jansen; Konstantin Severinov; Seth A Darst
Journal:  EMBO J       Date:  2005-02-03       Impact factor: 11.598

5.  Novel rapidly diversifiable antimicrobial RNA polymerase switch region inhibitors with confirmed mode of action in Haemophilus influenzae.

Authors:  Ed T Buurman; Melinda A Foulk; Ning Gao; Valerie A Laganas; David C McKinney; Demetri T Moustakas; Jonathan A Rose; Adam B Shapiro; Paul R Fleming
Journal:  J Bacteriol       Date:  2012-07-27       Impact factor: 3.490

6.  The nucleotide addition cycle of RNA polymerase is controlled by two molecular hinges in the Bridge Helix domain.

Authors:  Robert O J Weinzierl
Journal:  BMC Biol       Date:  2010-10-29       Impact factor: 7.364

7.  Mode of action of streptolydigin.

Authors:  C Siddhikol; J W Erbstoeszer; B Weisblum
Journal:  J Bacteriol       Date:  1969-07       Impact factor: 3.490

8.  GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides.

Authors:  Yu Zhang; David Degen; Mary X Ho; Elena Sineva; Katherine Y Ebright; Yon W Ebright; Vladimir Mekler; Hanif Vahedian-Movahed; Yu Feng; Ruiheng Yin; Steve Tuske; Herbert Irschik; Rolf Jansen; Sonia Maffioli; Stefano Donadio; Eddy Arnold; Richard H Ebright
Journal:  Elife       Date:  2014-04-22       Impact factor: 8.140

9.  Transcription inhibition by the depsipeptide antibiotic salinamide A.

Authors:  David Degen; Yu Feng; Yu Zhang; Katherine Y Ebright; Yon W Ebright; Matthew Gigliotti; Hanif Vahedian-Movahed; Sukhendu Mandal; Meliza Talaue; Nancy Connell; Eddy Arnold; William Fenical; Richard H Ebright
Journal:  Elife       Date:  2014-04-30       Impact factor: 8.140

10.  The RNA polymerase "switch region" is a target for inhibitors.

Authors:  Jayanta Mukhopadhyay; Kalyan Das; Sajida Ismail; David Koppstein; Minyoung Jang; Brian Hudson; Stefan Sarafianos; Steven Tuske; Jay Patel; Rolf Jansen; Herbert Irschik; Eddy Arnold; Richard H Ebright
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

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