| Literature DB >> 31101031 |
Yuqing Qi1, Jie Kong1, Jinyan He2.
Abstract
BACKGROUND: We retrieved different reports containing different genetic effects of - 1082 A/G, - 819 T/C, and - 592 A/C polymorphisms within the IL-10 (interleukin-10) gene on the susceptibility to clinical atopic dermatitis.Entities:
Keywords: Atopic dermatitis; IL-10; Polymorphism; Susceptibility
Mesh:
Substances:
Year: 2019 PMID: 31101031 PMCID: PMC6525399 DOI: 10.1186/s12881-019-0817-8
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Fig. 1PRISMA-based flow chart for study enrolment
Basic information for the studies included in the meta-analysis
| First author, Year | [Ref.] | Ethnicity | Country | SNPs | Control | Case | Genotyping method | HWE P | |
|---|---|---|---|---|---|---|---|---|---|
| XX/XY/YY | Source | XX/XY/YY | |||||||
| Arkwright, 2001 | [ | Mixed | UK | -1082A/G | 16/21/13 | PB | 22/30/16 | ARMS-PCR | 0.27 |
| Babic, 2016 | [ | Caucasian | Croatia | -1082A/G | 25/107* | PB | 9/28* | KASP + competitive ASPCR | >0.05 |
| Behniafard, 2018 | [ | Asian | Iran | -1082A/G | 53/75/12 | PB | 30/46/13 | PCR-SSP | 0.04 |
| -819 T/C | 12/57/71 | PB | 6/42/41 | PCR-SSP | 0.91 | ||||
| -592A/C | 12/57/71 | PB | 5/42/42 | PCR-SSP | 0.91 | ||||
| Bin, 2018 | [ | Asian | Saudi Arabia | -1082A/G | 36/159/16 | PB | 30/53/21 | ARMS-PCR | < 0.05 |
| -819 T/C | 21/102/88 | PB | 14/54/36 | ARMS-PCR | 0.27 | ||||
| -592A/C | 21/102/88 | PB | 14/54/36 | ARMS-PCR | 0.27 | ||||
| Chang, 2006 | [ | Asian | China | -1082A/G | 344#/28# | PB | 174#/14# | gene sequecing | >0.05 |
| -819 T/C | 250#/122# | PB | 132#/56# | gene sequecing | >0.05 | ||||
| -592A/C | 250#/122# | PB | 132#/56# | gene sequecing | >0.05 | ||||
| Esposito, 2015 | [ | Caucasian | Italy | -1082A/G | 38/60/20 | PB | 50/41/10 | TaqMan Array | 0.65 |
| -592A/C | 6/39/73 | PB | 13/49/42 | TaqMan Array | 0.79 | ||||
| Jain, 2017 | [ | Asian | India | -1082A/G | 7/31/0 | PB | 23/15/0 | ARMS-PCR | < 0.05 |
| -819 T/C | 1/28/9 | PB | 8/26/4 | ARMS-PCR | < 0.05 | ||||
| -592A/C | 1/28/9 | PB | 8/26/4 | ARMS-PCR | < 0.05 | ||||
| Kayserova, 2012 | [ | Caucasian | Czech Republic | -1082A/G | 20/71/11 | PB | 29/43/16 | PCR-SSP | < 0.05 |
| -819 T/C | 4/50/48 | PB | 7/26/55 | PCR-SSP | 0.04 | ||||
| -592A/C | 5/48/49 | PB | 8/25/55 | PCR-SSP | 0.11 | ||||
| Lesiak, 2011 | [ | Caucasian | Poland | -1082A/G | 67/89/48 | PB | 54/75/34 | PCR-RFLP | 0.09 |
| Lesiak, 2014 | [ | Caucasian | Poland | -1082A/G | 20/26/14 | PB | 25/35/16 | PCR-RFLP | 0.33 |
| Reich, 2003 | [ | Caucasian | Germany | -1082A/G | 49/118/47 | PB | 18/53/23 | PCR-RFLP/sequencing | 0.13 |
| Sheng, 2018 | [ | Asian | China | -819 T/C | 128/130/41 | PB | 83/154/63 | Sequenom MassARRAY | 0.39 |
| Sohn, 2007 | [ | Asian | Korea | -1082A/G | 124/15/1 | PB | 241/35/0 | PCR-RFLP/sequencing | 0.47 |
| -819 T/C | 66/68/6 | PB | 145/104/27 | PCR-RFLP/sequencing | 0.02 | ||||
| -592A/C | 64/65/11 | PB | 137/110/29 | PCR-RFLP/sequencing | 0.32 | ||||
| Stavric, 2012 | [ | Caucasian | Macedonia | -1082A/G | 70/212/17 | PB | 8/55/3 | PCR-SSP | < 0.05 |
| -819 T/C | 155/125/19 | PB | 39/27/0 | PCR-SSP | 0.35 | ||||
| -592A/C | 28/117/154 | PB | 3/27/36 | PCR-SSP | 0.40 | ||||
| Yinji, 2010 | [ | Asian | China | -1082A/G | 109/20/0 | PB | 143/30/0 | TaqMan | 0.34 |
| -819 T/C | 55/60/14 | PB | 89/70/14 | TaqMan | 0.69 | ||||
| -592A/C | 55/60/14 | PB | 89/70/14 | TaqMan | 0.69 | ||||
| Zakrzewski, 2010 | [ | Caucasian | Poland | -1082A/G | 67/89/48 | PB | 54/75/34 | PCR-RFLP | 0.09 |
Ref. reference, SNPs single nucleotide polymorphisms, XX AA genotype (−1082 A/G SNP), TT genotype (−819 T/C SNP), AA genotype (−592 A/C SNP), XY AG genotype (−1082 A/G SNP), TC genotype (−819 T/C SNP), AC genotype (−592 A/C SNP), YY GG genotype (− 1082 A/G SNP), CC genotype (− 819 T/C SNP), CC genotype (− 592 A/C SNP), PB population-based control, ARMS amplification refractory mutational system, PCR polymerase chain reaction; KASP Kompetitive Allele Specific PCR, ASPCR allele-specific PCR, SSP sequence specific primer, RFLP restriction fragment-length polymorphism, HWE Hardy-Weinberg equilibrium
* the frequency data of AG + GG; # the frequency data of X, Y allele
Meta-analysis of IL-10 -1082 A/G SNP
| Genetic model | Group | Study number | Case/Control |
| OR (95% CI) |
|---|---|---|---|---|---|
| Allele G vs. A | Overall | 14 | 1593/2095 | 0.540 | 0.96 (0.86~1.07) |
| Asian | 6 | 774/844 | 0.990 | 1.00 (0.82~1.22) | |
| Caucasian | 7 | 751/1201 | 0.395 | 0.94 (0.83~1.08) | |
| Poland | 3 | 402/468 | 0.562 | 0.95 (0.78~1.14) | |
| Y | 9 | 1208/1305 | 0.326 | 0.93 (0.82~1.07) | |
| Asian/Y | 3 | 543/455 | 0.751 | 1.06 (0.74~1.51) | |
| Caucasian/Y | 5 | 597/800 | 0.238 | 0.91 (0.78~1.06) | |
| Poland/Y | 3 | 402/468 | 0.562 | 0.95 (0.78~1.14) | |
| GG vs. AA | Overall | 11 | 1288/1742 | 0.853 | 0.98 (0.76~1.25) |
| Asian | 3 | 469/491 | 0.144 | 1.55 (0.86~2.78) | |
| Caucasian | 7 | 751/1201 | 0.390 | 0.88 (0.66~1.17) | |
| Poland | 3 | 402/468 | 0.513 | 0.88 (0.61~1.28) | |
| Y | 7 | 941/990 | 0.241 | 0.84 (0.63~1.12) | |
| Caucasian/Y | 5 | 597/800 | 0.299 | 0.85 (0.63~1.15) | |
| Poland/Y | 3 | 402/468 | 0.513 | 0.88 (0.61~1.28) | |
| AG vs AA | Overall | 13 | 1499/1909 | 0.265 | 0.84 (0.62~1.14) |
| Asian | 5 | 680/658 | 0.216 | 0.66 (0.35~1.27) | |
| Caucasian | 7 | 751/1201 | 0.720 | 0.93 (0.65~1.35) | |
| Poland | 3 | 402/468 | 0.753 | 1.05 (0.77~1.43) | |
| Y | 8 | 1114/1119 | 0.975 | 1.00 (0.81~1.23) | |
| Caucasian/Y | 5 | 597/800 | 0.683 | 0.94 (0.71~1.26) | |
| Poland/Y | 3 | 402/468 | 0.753 | 1.05 (0.77~1.43) | |
| AG + GG vs AA | Overall | 14 | 1536/2041 | 0.221 | 0.85 (0.65~1.10) |
| Asian | 5 | 680/658 | 0.268 | 0.71 (0.39~1.30) | |
| Caucasian | 8 | 788/1333 | 0.502 | 0.90 (0.66~1.23) | |
| Poland | 3 | 402/468 | 0.957 | 0.99 (0.75~1.32) | |
| Y | 9 | 1151/1251 | 0.521 | 0.94 (0.77~1.14) | |
| Caucasian/Y | 6 | 634/932 | 0.369 | 0.88 (0.68~1.16) | |
| Poland/Y | 3 | 402/468 | 0.957 | 0.99 (0.75~1.32) | |
| GG vs AA + AG | Overall | 11 | 1288/1742 | 0.540 | 1.07 (0.86~1.32) |
| Asian | 3 | 469/491 | 0.003 | 2.22 (1.32~3.74) | |
| Caucasian | 7 | 751/1201 | 0.538 | 0.93 (0.72~1.18) | |
| Poland | 3 | 402/468 | 0.358 | 0.86 (0.62~1.19) | |
| Y | 7 | 941/990 | 0.233 | 0.86 (0.67~1.10) | |
| Caucasian/Y | 5 | 597/800 | 0.295 | 0.87 (0.67~1.13) | |
| Poland/Y | 3 | 402/468 | 0.358 | 0.86 (0.62~1.19) | |
| Carrier G vs. A | Overall | 13 | 1499/1909 | 0.643 | 0.97 (0.86~1.10) |
| Asian | 5 | 680/658 | 0.968 | 1.00 (0.79~1.25) | |
| Caucasian | 7 | 751/1201 | 0.608 | 0.96 (0.82~1.12) | |
| Poland | 3 | 402/468 | 0.751 | 0.96 (0.77~1.21) | |
| Y | 8 | 1114/1119 | 0.619 | 0.96 (0.82~1.13) | |
| Caucasian/Y | 5 | 597/800 | 0.475 | 0.94 (0.78~1.12) | |
| Poland/Y | 3 | 402/468 | 0.751 | 0.96 (0.77~1.21) |
OR odds ratio, Y P value of HWE >0.05, CI confidence interval
Fig. 2Overall meta-analysis of the IL-10 -1082 A/G SNP under the allelic model. a Forest plot; (b) Egger’s publication bias plot; (c) Sensitivity analysis
Meta-analysis of IL-10 -819 T/C SNP
| Genetic model | Group | Study number | Case/Control |
| OR (95% CI) |
|---|---|---|---|---|---|
| Allele C vs. T | Overall | 9 | 1228/1544 | 0.547 | 0.93 (0.74~1.18) |
| Asian | 7 | 1074/1143 | 0.550 | 0.92 (0.71~1.20) | |
| China | 3 | 567/614 | 0.893 | 1.03 (0.63~1.70) | |
| Y | 7 | 1102/1404 | 0.610 | 0.94 (0.73~1.21) | |
| Asian/Y | 6 | 1036/1105 | 0.866 | 0.98 (0.75~1.28) | |
| CC vs. TT | Overall | 8 | 1134/1358 | 0.588 | 0.83 (0.42~1.63) |
| Asian | 6 | 980/957 | 0.915 | 0.96 (0.46~1.99) | |
| Y | 6 | 1008/1218 | 0.870 | 1.06 (0.54~2.07) | |
| Asian/Y | 5 | 942/919 | 0.593 | 1.19 (0.63~2.26) | |
| TC vs. TT | Overall | 8 | 1134/1358 | 0.405 | 0.83 (0.55~1.28) |
| Asian | 6 | 980/957 | 0.697 | 0.90 (0.54~1.51) | |
| Y | 6 | 1008/1218 | 0.892 | 0.97 (0.65~1.45) | |
| Asian/Y | 5 | 942/919 | 0.995 | 1.00 (0.62~1.62) | |
| TC + CC vs. TT | Overall | 8 | 1134/1358 | 0.433 | 0.84 (0.55~1.30) |
| Asian | 6 | 980/957 | 0.693 | 0.90 (0.53~1.52) | |
| Y | 6 | 1008/1218 | 0.845 | 0.96 (0.63~1.47) | |
| Asian/Y | 5 | 942/919 | 0.975 | 1.01 (0.61~1.66) | |
| CC vs. TT + TC | Overall | 8 | 1134/1358 | 0.821 | 1.05 (0.69~1.60) |
| Asian | 6 | 980/957 | 0.991 | 1.00 (0.64~1.55) | |
| Y | 6 | 1008/1218 | 0.900 | 1.03 (0.65~1.64) | |
| Asian/Y | 5 | 942/919 | 0.706 | 1.09 (0.70~1.70) | |
| Carrier C vs. T | Overall | 8 | 1134/1358 | 0.801 | 1.02 (0.88~1.17) |
| Asian | 6 | 980/957 | 0.816 | 1.02 (0.87~1.19) | |
| Y | 6 | 1008/1218 | 0.867 | 1.01 (0.87~1.18) | |
| Asian/Y | 5 | 942/919 | 0.631 | 1.04 (0.89~1.22) |
OR odds ratio, Y P value of HWE >0.05, CI confidence interval
Fig. 3Overall meta-analysis of the IL-10 -819 T/C SNP under the allelic model. (a) Forest plot; (b) Egger’s publication bias plot; (c) Sensitivity analysis
Meta-analysis of IL-10 -592 A/C SNP
| Genetic model | Group | Study number | Case/Control |
| OR (95% CI) |
|---|---|---|---|---|---|
| Allele C vs. A | Overall | 9 | 1032/1363 | 0.109 | 0.85 (0.70~1.04) |
| Asian | 6 | 774/844 | 0.033 | 0.85 (0.73~0.99) | |
| Caucasian | 3 | 258/519 | 0.788 | 0.92 (0.49~1.73) | |
| Y | 8 | 994/1325 | 0.204 | 0.88 (0.73~1.07) | |
| Asian/Y | 5 | 736/806 | 0.086 | 0.87 (0.74~1.02) | |
| Caucasian/Y | 3 | 258/519 | 0.788 | 0.92 (0.49~1.73) | |
| CC vs. AA | Overall | 8 | 938/1177 | 0.227 | 0.72 (0.42~1.23) |
| Asian | 5 | 680/658 | 0.353 | 0.75 (0.40~1.38) | |
| Caucasian | 3 | 258/519 | 0.582 | 0.71 (0.21~2.38) | |
| Y | 7 | 900/1139 | 0.349 | 0.80 (0.50~1.28) | |
| Asian/Y | 4 | 642/620 | 0.471 | 0.86 (0.56~1.30) | |
| Caucasian/Y | 3 | 258/519 | 0.582 | 0.71 (0.21~2.38) | |
| AC vs. AA | Overall | 8 | 938/1177 | 0.039 | 0.77 (0.59~0.99) |
| Asian | 5 | 680/658 | 0.061 | 0.77 (0.58~1.01) | |
| Caucasian | 3 | 258/519 | 0.387 | 0.76 (0.41~1.41) | |
| Y | 7 | 900/1139 | 0.093 | 0.80 (0.62~1.04) | |
| Asian/Y | 4 | 642/620 | 0.146 | 0.81 (0.61~1.08) | |
| Caucasian/Y | 3 | 258/519 | 0.387 | 0.76 (0.41~1.41) | |
| AC + CC vs. AA | Overall | 8 | 938/1177 | 0.026 | 0.76 (0.60~0.97) |
| Asian | 5 | 680/658 | 0.049 | 0.77 (0.59~1.00) | |
| Caucasian | 3 | 258/519 | 0.290 | 0.73 (0.41~1.31) | |
| Y | 7 | 900/1139 | 0.069 | 0.80 (0.62~1.02) | |
| Asian/Y | 4 | 642/620 | 0.128 | 0.81 (0.62~1.06) | |
| Caucasian/Y | 3 | 258/519 | 0.290 | 0.73 (0.41~1.31) | |
| CC vs. AA + AC | Overall | 8 | 938/1177 | 0.416 | 0.86 (0.61~1.23) |
| Asian | 5 | 680/658 | 0.194 | 0.83 (0.62~1.10) | |
| Caucasian | 3 | 258/519 | 0.892 | 0.94 (0.41~2.19) | |
| Y | 7 | 900/1139 | 0.597 | 0.91 (0.63~1.30) | |
| Asian/Y | 4 | 642/620 | 0.324 | 0.86 (0.64~1.16) | |
| Caucasian/Y | 3 | 258/519 | 0.892 | 0.94 (0.41~2.19) | |
| Carrier C vs. A | Overall | 8 | 938/1177 | 0.170 | 0.90 (0.77~1.05) |
| Asian | 5 | 680/658 | 0.180 | 0.88 (0.73~1.06) | |
| Caucasian | 3 | 258/519 | 0.640 | 0.94 (0.71~1.24) | |
| Y | 7 | 900/1139 | 0.244 | 0.91 (0.77~1.07) | |
| Asian/Y | 4 | 642/620 | 0.273 | 0.90 (0.74~1.09) | |
| Caucasian/Y | 3 | 258/519 | 0.640 | 0.94 (0.71~1.24) |
OR odds ratio, Y P value of HWE >0.05, CI confidence interval
Fig. 4Overall meta-analysis of IL-10 -592 A/C SNP under the allelic model. (a) Forest plot; (b) Egger’s publication bias plot; (c) Sensitivity analysis