SUMMARY: Complementary advances in genomic technology and public data resources have created opportunities for researchers to conduct multifaceted examination of the genome on a large scale. To meet the need for integrative genome wide exploration, we present epiTAD. This web-based tool enables researchers to compare genomic 3D organization and annotations across multiple databases in an interactive manner to facilitate in silico discovery. AVAILABILITY AND IMPLEMENTATION: epiTAD can be accessed at https://apps.gerkelab.com/epiTAD/ where we have additionally made publicly available the source code and a Docker containerized version of the application.
SUMMARY: Complementary advances in genomic technology and public data resources have created opportunities for researchers to conduct multifaceted examination of the genome on a large scale. To meet the need for integrative genome wide exploration, we present epiTAD. This web-based tool enables researchers to compare genomic 3D organization and annotations across multiple databases in an interactive manner to facilitate in silico discovery. AVAILABILITY AND IMPLEMENTATION: epiTAD can be accessed at https://apps.gerkelab.com/epiTAD/ where we have additionally made publicly available the source code and a Docker containerized version of the application.
Authors: Kathryn L Penney; Jennifer A Sinnott; Svitlana Tyekucheva; Travis Gerke; Irene M Shui; Peter Kraft; Howard D Sesso; Matthew L Freedman; Massimo Loda; Lorelei A Mucci; Meir J Stampfer Journal: Cancer Epidemiol Biomarkers Prev Date: 2014-11-04 Impact factor: 4.254
Authors: Latarsha J Carithers; Kristin Ardlie; Mary Barcus; Philip A Branton; Angela Britton; Stephen A Buia; Carolyn C Compton; David S DeLuca; Joanne Peter-Demchok; Ellen T Gelfand; Ping Guan; Greg E Korzeniewski; Nicole C Lockhart; Chana A Rabiner; Abhi K Rao; Karna L Robinson; Nancy V Roche; Sherilyn J Sawyer; Ayellet V Segrè; Charles E Shive; Anna M Smith; Leslie H Sobin; Anita H Undale; Kimberly M Valentino; Jim Vaught; Taylor R Young; Helen M Moore Journal: Biopreserv Biobank Date: 2015-10 Impact factor: 2.300
Authors: Yanli Wang; Fan Song; Bo Zhang; Lijun Zhang; Jie Xu; Da Kuang; Daofeng Li; Mayank N K Choudhary; Yun Li; Ming Hu; Ross Hardison; Ting Wang; Feng Yue Journal: Genome Biol Date: 2018-10-04 Impact factor: 13.583
Authors: Gustavo Mendoza-Fandiño; Paulo Cilas M Lyra; Thales C Nepomuceno; Carly M Harro; Nicholas T Woods; Xueli Li; Leticia B Rangel; Marcelo A Carvalho; Fergus J Couch; Alvaro N A Monteiro Journal: Eur J Hum Genet Date: 2021-11-22 Impact factor: 4.246
Authors: Victoria Wang; Milan S Geybels; Kristina M Jordahl; Travis Gerke; Anis Hamid; Kathryn L Penney; Sarah C Markt; Matthew Freedman; Mark Pomerantz; Gwo-Shu M Lee; Huma Rana; Daniela Börnigen; Timothy R Rebbeck; Curtis Huttenhower; Ros A Eeles; Janet L Stanford; Practical Consortium; Sonja I Berndt; Frank Claessens; Karina D Sørensen; Jong Y Park; Ana Vega; Nawaid Usmani; Lorelei Mucci; Christopher J Sweeney Journal: Prostate Date: 2021-05-06 Impact factor: 4.012