Literature DB >> 31091989

Molecular classification of colorectal cancer using the gene expression profile of tumor samples.

Mamoon Rashid1,2,3, Ramesh K Vishwakarma1,2,3, Ahmad M Deeb2,3,4, Mohamed A Hussein1,2,3, Mohammad A Aziz2,3,5.   

Abstract

Entities:  

Keywords:  Colorectal cancer; exon ST; gene expression; molecular classification; molecular subtyping; survival analysis; tumor classification

Mesh：

Substances：

Year:  2019        PMID： 31091989      PMCID： PMC6879775          DOI： 10.1177/1535370219850788

Source DB:  PubMed          Journal:  Exp Biol Med (Maywood)        ISSN： 1535-3699


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  30 in total

1.  Summaries of Affymetrix GeneChip probe level data.

Authors:  Rafael A Irizarry; Benjamin M Bolstad; Francois Collin; Leslie M Cope; Bridget Hobbs; Terence P Speed
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

2.  Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

Authors:  Rafael A Irizarry; Bridget Hobbs; Francois Collin; Yasmin D Beazer-Barclay; Kristen J Antonellis; Uwe Scherf; Terence P Speed
Journal:  Biostatistics       Date:  2003-04       Impact factor: 5.899

3.  Microsatellite instability, prognosis and drug sensitivity of stage II and III colorectal cancer: more complexity to the puzzle.

Authors:  Sabine Tejpar; Zacharenia Saridaki; Mauro Delorenzi; Fred Bosman; Arnaud D Roth
Journal:  J Natl Cancer Inst       Date:  2011-05-19       Impact factor: 13.506

4.  Identification of a poor-prognosis BRAF-mutant-like population of patients with colon cancer.

Authors:  Vlad Popovici; Eva Budinska; Sabine Tejpar; Scott Weinrich; Heather Estrella; Graeme Hodgson; Eric Van Cutsem; Tao Xie; Fred T Bosman; Arnaud D Roth; Mauro Delorenzi
Journal:  J Clin Oncol       Date:  2012-03-05       Impact factor: 44.544

5.  Hierarchical clustering analysis of pathologic and molecular data identifies prognostically and biologically distinct groups of colorectal carcinomas.

Authors:  Daniela Furlan; Ileana W Carnevali; Barbara Bernasconi; Nora Sahnane; Katia Milani; Roberta Cerutti; Valentina Bertolini; Anna Maria Chiaravalli; Francesco Bertoni; Ivo Kwee; Roberta Pastorino; Capella Carlo
Journal:  Mod Pathol       Date:  2010-09-17       Impact factor: 7.842

6.  Subtypes of primary colorectal tumors correlate with response to targeted treatment in colorectal cell lines.

Authors:  Andreas Schlicker; Garry Beran; Christine M Chresta; Gael McWalter; Alison Pritchard; Susie Weston; Sarah Runswick; Sara Davenport; Kerry Heathcote; Denis Alferez Castro; George Orphanides; Tim French; Lodewyk F A Wessels
Journal:  BMC Med Genomics       Date:  2012-12-31       Impact factor: 3.063

7.  Single-cell dissection of transcriptional heterogeneity in human colon tumors.

Authors:  Piero Dalerba; Tomer Kalisky; Debashis Sahoo; Pradeep S Rajendran; Michael E Rothenberg; Anne A Leyrat; Sopheak Sim; Jennifer Okamoto; Darius M Johnston; Dalong Qian; Maider Zabala; Janet Bueno; Norma F Neff; Jianbin Wang; Andrew A Shelton; Brendan Visser; Shigeo Hisamori; Yohei Shimono; Marc van de Wetering; Hans Clevers; Michael F Clarke; Stephen R Quake
Journal:  Nat Biotechnol       Date:  2011-11-13       Impact factor: 54.908

8.  Gene expression classification of colon cancer into molecular subtypes: characterization, validation, and prognostic value.

Authors:  Laetitia Marisa; Aurélien de Reyniès; Alex Duval; Janick Selves; Marie Pierre Gaub; Laure Vescovo; Marie-Christine Etienne-Grimaldi; Renaud Schiappa; Dominique Guenot; Mira Ayadi; Sylvain Kirzin; Maurice Chazal; Jean-François Fléjou; Daniel Benchimol; Anne Berger; Arnaud Lagarde; Erwan Pencreach; Françoise Piard; Dominique Elias; Yann Parc; Sylviane Olschwang; Gérard Milano; Pierre Laurent-Puig; Valérie Boige
Journal:  PLoS Med       Date:  2013-05-21       Impact factor: 11.069

9.  Repeated observation of breast tumor subtypes in independent gene expression data sets.

Authors:  Therese Sorlie; Robert Tibshirani; Joel Parker; Trevor Hastie; J S Marron; Andrew Nobel; Shibing Deng; Hilde Johnsen; Robert Pesich; Stephanie Geisler; Janos Demeter; Charles M Perou; Per E Lønning; Patrick O Brown; Anne-Lise Børresen-Dale; David Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-26       Impact factor: 12.779

10.  The consensus molecular subtypes of colorectal cancer.

Authors:  Justin Guinney; Rodrigo Dienstmann; Xin Wang; Aurélien de Reyniès; Andreas Schlicker; Charlotte Soneson; Laetitia Marisa; Paul Roepman; Gift Nyamundanda; Paolo Angelino; Brian M Bot; Jeffrey S Morris; Iris M Simon; Sarah Gerster; Evelyn Fessler; Felipe De Sousa E Melo; Edoardo Missiaglia; Hena Ramay; David Barras; Krisztian Homicsko; Dipen Maru; Ganiraju C Manyam; Bradley Broom; Valerie Boige; Beatriz Perez-Villamil; Ted Laderas; Ramon Salazar; Joe W Gray; Douglas Hanahan; Josep Tabernero; Rene Bernards; Stephen H Friend; Pierre Laurent-Puig; Jan Paul Medema; Anguraj Sadanandam; Lodewyk Wessels; Mauro Delorenzi; Scott Kopetz; Louis Vermeulen; Sabine Tejpar
Journal:  Nat Med       Date:  2015-10-12       Impact factor: 53.440
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  1 in total

Review 1.  Colorectal cancer in Saudi Arabia as the proof-of-principle model for implementing strategies of predictive, preventive, and personalized medicine in healthcare.

Authors:  Mesnad Alyabsi; Abdulrahman Alhumaid; Haafiz Allah-Bakhsh; Mohammed Alkelya; Mohammad Azhar Aziz
Journal:  EPMA J       Date:  2019-08-31       Impact factor: 6.543
  1 in total

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