Literature DB >> 31088892

Biochemical and structural investigation of taurine:2-oxoglutarate aminotransferase from Bifidobacterium kashiwanohense.

Mengya Li1, Yifeng Wei2, Jinyu Yin1, Lianyun Lin1, Yan Zhou1, Gaoqun Hua1, Peng Cao3, Ee Lui Ang2, Huimin Zhao4,5, Zhiguang Yuchi1, Yan Zhang1.   

Abstract

Taurine aminotransferases catalyze the first step in taurine catabolism in many taurine-degrading bacteria and play an important role in bacterial taurine metabolism in the mammalian gut. Here, we report the biochemical and structural characterization of a new taurine:2-oxoglutarate aminotransferase from the human gut bacterium Bifidobacterium kashiwanohense (BkToa). Biochemical assays revealed high specificity of BkToa for 2-oxoglutarate as the amine acceptor. The crystal structure of BkToa in complex with pyridoxal 5'-phosphate (PLP) and glutamate was determined at 2.7 Å resolution. The enzyme forms a homodimer, with each monomer exhibiting a typical type I PLP-enzyme fold and conserved PLP-coordinating residues interacting with the PLP molecule. Two glutamate molecules are bound in sites near the predicted active site and they may occupy a path for substrate entry and product release. Molecular docking reveals a role for active site residues Trp21 and Arg156, conserved in Toa enzymes studied to date, in interacting with the sulfonate group of taurine. Bioinformatics analysis shows that the close homologs of BkToa are also present in other anaerobic gut bacteria.
© 2019 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

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Keywords:  2-oxoglutarate; aminotransferase; gut bacteria; isethionate; sulfoacetaldehyde; taurine

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Year:  2019        PMID: 31088892     DOI: 10.1042/BCJ20190206

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  2 in total

1.  An extended bacterial reductive pyrimidine degradation pathway that enables nitrogen release from β-alanine.

Authors:  Jinyu Yin; Yifeng Wei; Dazhi Liu; Yiling Hu; Qiang Lu; Ee Lui Ang; Huimin Zhao; Yan Zhang
Journal:  J Biol Chem       Date:  2019-08-27       Impact factor: 5.157

2.  A Pathway for Degradation of Uracil to Acetyl Coenzyme A in Bacillus megaterium.

Authors:  Di Zhu; Yifeng Wei; Jinyu Yin; Dazhi Liu; Ee Lui Ang; Huimin Zhao; Yan Zhang
Journal:  Appl Environ Microbiol       Date:  2020-03-18       Impact factor: 4.792

  2 in total

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