Literature DB >> 31088843

Epigenetic aberrations in human pluripotent stem cells.

Shiran Bar1, Nissim Benvenisty2.   

Abstract

Human pluripotent stem cells (hPSCs) are being increasingly utilized worldwide in investigating human development, and modeling and discovering therapies for a wide range of diseases as well as a source for cellular therapy. Yet, since the first isolation of human embryonic stem cells (hESCs) 20 years ago, followed by the successful reprogramming of human-induced pluripotent stem cells (hiPSCs) 10 years later, various studies shed light on abnormalities that sometimes accumulate in these cells in vitro Whereas genetic aberrations are well documented, epigenetic alterations are not as thoroughly discussed. In this review, we highlight frequent epigenetic aberrations found in hPSCs, including alterations in DNA methylation patterns, parental imprinting, and X chromosome inactivation. We discuss the potential origins of these abnormalities in hESCs and hiPSCs, survey the different methods for detecting them, and elaborate on their potential consequences for the different utilities of hPSCs.
© 2019 The Authors.

Entities:  

Keywords:  DNA methylation; X chromosome inactivation; epigenetic alterations; human pluripotent stem cells; imprinting

Mesh:

Year:  2019        PMID: 31088843      PMCID: PMC6576196          DOI: 10.15252/embj.2018101033

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  183 in total

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Journal:  Cell Stem Cell       Date:  2010-08-06       Impact factor: 24.633

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Journal:  Carcinogenesis       Date:  2006-11-17       Impact factor: 4.944

3.  Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells.

Authors:  Sergio Ruiz; Dinh Diep; Athurva Gore; Athanasia D Panopoulos; Nuria Montserrat; Nongluk Plongthongkum; Sachin Kumar; Ho-Lim Fung; Alessandra Giorgetti; Josipa Bilic; Erika M Batchelder; Holm Zaehres; Natalia G Kan; Hans Robert Schöler; Mark Mercola; Kun Zhang; Juan Carlos Izpisua Belmonte
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-18       Impact factor: 11.205

4.  The dynamic changes of X chromosome inactivation during early culture of human embryonic stem cells.

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Journal:  Stem Cell Res       Date:  2016-05-22       Impact factor: 2.020

5.  Loss of methylation activates Xist in somatic but not in embryonic cells.

Authors:  C Beard; E Li; R Jaenisch
Journal:  Genes Dev       Date:  1995-10-01       Impact factor: 11.361

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Journal:  Expert Rev Mol Med       Date:  2011-01-25       Impact factor: 5.600

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Authors:  Mark H Chin; Mike J Mason; Wei Xie; Stefano Volinia; Mike Singer; Cory Peterson; Gayane Ambartsumyan; Otaren Aimiuwu; Laura Richter; Jin Zhang; Ivan Khvorostov; Vanessa Ott; Michael Grunstein; Neta Lavon; Nissim Benvenisty; Carlo M Croce; Amander T Clark; Tim Baxter; April D Pyle; Mike A Teitell; Matteo Pelegrini; Kathrin Plath; William E Lowry
Journal:  Cell Stem Cell       Date:  2009-07-02       Impact factor: 24.633

Review 8.  Identifying Human Naïve Pluripotent Stem Cells - Evaluating State-Specific Reporter Lines and Cell-Surface Markers.

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Journal:  EBioMedicine       Date:  2016-12-03       Impact factor: 8.143

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  19 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-02       Impact factor: 11.205

Review 2.  Role of epigenetics in cellular reprogramming; from iPSCs to disease modeling and cell therapy.

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Review 4.  Proteomics in the World of Induced Pluripotent Stem Cells.

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Journal:  Cells       Date:  2019-07-11       Impact factor: 6.600

5.  Transient inhibition of mTOR in human pluripotent stem cells enables robust formation of mouse-human chimeric embryos.

Authors:  Zhixing Hu; Hanqin Li; Houbo Jiang; Yong Ren; Xinyang Yu; Jingxin Qiu; Aimee B Stablewski; Boyang Zhang; Michael J Buck; Jian Feng
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6.  Sustained intrinsic WNT and BMP4 activation impairs hESC differentiation to definitive endoderm and drives the cells towards extra-embryonic mesoderm.

Authors:  C Markouli; E Couvreu De Deckersberg; D Dziedzicka; M Regin; S Franck; A Keller; A Gheldof; M Geens; K Sermon; C Spits
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Review 7.  Epigenetic Mechanisms of ART-Related Imprinting Disorders: Lessons From iPSC and Mouse Models.

Authors:  Alex Horánszky; Jessica L Becker; Melinda Zana; Anne C Ferguson-Smith; András Dinnyés
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Review 8.  Human in vitro models for understanding mechanisms of autism spectrum disorder.

Authors:  Aaron Gordon; Daniel H Geschwind
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Review 9.  Modeling Maturity Onset Diabetes of the Young in Pluripotent Stem Cells: Challenges and Achievements.

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Journal:  Front Endocrinol (Lausanne)       Date:  2021-02-22       Impact factor: 5.555

10.  Contiguous erosion of the inactive X in human pluripotency concludes with global DNA hypomethylation.

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