Literature DB >> 31086312

Global diversity and biogeography of bacterial communities in wastewater treatment plants.

Linwei Wu1,2, Daliang Ning1,2,3, Bing Zhang1,2, Yong Li4, Ping Zhang2,5, Xiaoyu Shan1, Qiuting Zhang1, Mathew Robert Brown6, Zhenxin Li7, Joy D Van Nostrand2, Fangqiong Ling8, Naijia Xiao2,3, Ya Zhang2, Julia Vierheilig9,10, George F Wells11, Yunfeng Yang1, Ye Deng12,13, Qichao Tu12, Aijie Wang13, Tong Zhang14, Zhili He15,16, Jurg Keller17, Per H Nielsen18, Pedro J J Alvarez19, Craig S Criddle20, Michael Wagner9, James M Tiedje21, Qiang He22,23, Thomas P Curtis24, David A Stahl25, Lisa Alvarez-Cohen26,27, Bruce E Rittmann28, Xianghua Wen29, Jizhong Zhou30,31,32.   

Abstract

Microorganisms in wastewater treatment plants (WWTPs) are essential for water purification to protect public and environmental health. However, the diversity of microorganisms and the factors that control it are poorly understood. Using a systematic global-sampling effort, we analysed the 16S ribosomal RNA gene sequences from ~1,200 activated sludge samples taken from 269 WWTPs in 23 countries on 6 continents. Our analyses revealed that the global activated sludge bacterial communities contain ~1 billion bacterial phylotypes with a Poisson lognormal diversity distribution. Despite this high diversity, activated sludge has a small, global core bacterial community (n = 28 operational taxonomic units) that is strongly linked to activated sludge performance. Meta-analyses with global datasets associate the activated sludge microbiomes most closely to freshwater populations. In contrast to macroorganism diversity, activated sludge bacterial communities show no latitudinal gradient. Furthermore, their spatial turnover is scale-dependent and appears to be largely driven by stochastic processes (dispersal and drift), although deterministic factors (temperature and organic input) are also important. Our findings enhance our mechanistic understanding of the global diversity and biogeography of activated sludge bacterial communities within a theoretical ecology framework and have important implications for microbial ecology and wastewater treatment processes.

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Year:  2019        PMID: 31086312     DOI: 10.1038/s41564-019-0426-5

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN: 2058-5276            Impact factor:   17.745


  73 in total

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Authors:  Vigdis Torsvik; Lise Øvreås; Tron Frede Thingstad
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

2.  Bacterial community structure in geographically distributed biological wastewater treatment reactors.

Authors:  Siqing Xia; Liang Duan; Yonghui Song; Jixiang Li; Yvette M Piceno; Gary L Andersen; Lisa Alvarez-Cohen; Ivan Moreno-Andrade; Chun-Lin Huang; Slawomir W Hermanowicz
Journal:  Environ Sci Technol       Date:  2010-10-01       Impact factor: 9.028

3.  Combined niche and neutral effects in a microbial wastewater treatment community.

Authors:  Irina Dana Ofiteru; Mary Lunn; Thomas P Curtis; George F Wells; Craig S Criddle; Christopher A Francis; William T Sloan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-12       Impact factor: 11.205

4.  The diversity and biogeography of soil bacterial communities.

Authors:  Noah Fierer; Robert B Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-09       Impact factor: 11.205

Review 5.  Disentangling the importance of ecological niches from stochastic processes across scales.

Authors:  Jonathan M Chase; Jonathan A Myers
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-08-27       Impact factor: 6.237

6.  Ocean plankton. Structure and function of the global ocean microbiome.

Authors:  Shinichi Sunagawa; Luis Pedro Coelho; Samuel Chaffron; Jens Roat Kultima; Karine Labadie; Guillem Salazar; Bardya Djahanschiri; Georg Zeller; Daniel R Mende; Adriana Alberti; Francisco M Cornejo-Castillo; Paul I Costea; Corinne Cruaud; Francesco d'Ovidio; Stefan Engelen; Isabel Ferrera; Josep M Gasol; Lionel Guidi; Falk Hildebrand; Florian Kokoszka; Cyrille Lepoivre; Gipsi Lima-Mendez; Julie Poulain; Bonnie T Poulos; Marta Royo-Llonch; Hugo Sarmento; Sara Vieira-Silva; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Chris Bowler; Colomban de Vargas; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Sabrina Speich; Lars Stemmann; Matthew B Sullivan; Jean Weissenbach; Patrick Wincker; Eric Karsenti; Jeroen Raes; Silvia G Acinas; Peer Bork
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

7.  Water treatment. Anticipating the next century of wastewater treatment.

Authors:  Mark C M van Loosdrecht; Damir Brdjanovic
Journal:  Science       Date:  2014-06-27       Impact factor: 47.728

Review 8.  Taking the "waste" out of "wastewater" for human water security and ecosystem sustainability.

Authors:  Stanley B Grant; Jean-Daniel Saphores; David L Feldman; Andrew J Hamilton; Tim D Fletcher; Perran L M Cook; Michael Stewardson; Brett F Sanders; Lisa A Levin; Richard F Ambrose; Ana Deletic; Rebekah Brown; Sunny C Jiang; Diego Rosso; William J Cooper; Ivan Marusic
Journal:  Science       Date:  2012-08-10       Impact factor: 47.728

Review 9.  High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats.

Authors:  Jizhong Zhou; Zhili He; Yunfeng Yang; Ye Deng; Susannah G Tringe; Lisa Alvarez-Cohen
Journal:  MBio       Date:  2015-01-27       Impact factor: 7.867

10.  A communal catalogue reveals Earth's multiscale microbial diversity.

Authors:  Luke R Thompson; Jon G Sanders; Daniel McDonald; Amnon Amir; Joshua Ladau; Kenneth J Locey; Robert J Prill; Anupriya Tripathi; Sean M Gibbons; Gail Ackermann; Jose A Navas-Molina; Stefan Janssen; Evguenia Kopylova; Yoshiki Vázquez-Baeza; Antonio González; James T Morton; Siavash Mirarab; Zhenjiang Zech Xu; Lingjing Jiang; Mohamed F Haroon; Jad Kanbar; Qiyun Zhu; Se Jin Song; Tomasz Kosciolek; Nicholas A Bokulich; Joshua Lefler; Colin J Brislawn; Gregory Humphrey; Sarah M Owens; Jarrad Hampton-Marcell; Donna Berg-Lyons; Valerie McKenzie; Noah Fierer; Jed A Fuhrman; Aaron Clauset; Rick L Stevens; Ashley Shade; Katherine S Pollard; Kelly D Goodwin; Janet K Jansson; Jack A Gilbert; Rob Knight
Journal:  Nature       Date:  2017-11-01       Impact factor: 49.962

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  75 in total

1.  Tropical and temperate wastewater treatment plants assemble different and diverse microbiomes.

Authors:  Yang Song; Wuttichai Mhuantong; Shuang-Yuan Liu; Nipon Pisutpaisal; Sarunyou Wongwilaiwalin; Pattanop Kanokratana; Ai-Jie Wang; Cheng-Ying Jiang; Verawat Champreda; Dong-Ru Qiu; Shuang-Jiang Liu
Journal:  Appl Microbiol Biotechnol       Date:  2021-01-06       Impact factor: 4.813

2.  Stochastic processes shape the bacterial community assembly in shrimp cultural pond sediments.

Authors:  Dongwei Hou; Renjun Zhou; Shenzheng Zeng; Dongdong Wei; Xisha Deng; Chengguang Xing; Shaoping Weng; Jianguo He; Zhijian Huang
Journal:  Appl Microbiol Biotechnol       Date:  2021-06-07       Impact factor: 4.813

Review 3.  Innovations to culturing the uncultured microbial majority.

Authors:  William H Lewis; Guillaume Tahon; Patricia Geesink; Diana Z Sousa; Thijs J G Ettema
Journal:  Nat Rev Microbiol       Date:  2020-10-22       Impact factor: 60.633

4.  Seasonal Dynamics of the Activated Sludge Microbiome in Sequencing Batch Reactors, Assessed Using 16S rRNA Transcript Amplicon Sequencing.

Authors:  Juliet Johnston; Sebastian Behrens
Journal:  Appl Environ Microbiol       Date:  2020-09-17       Impact factor: 4.792

5.  Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets.

Authors:  Yi Yue; Hao Huang; Zhao Qi; Hui-Min Dou; Xin-Yi Liu; Tian-Fei Han; Yue Chen; Xiang-Jun Song; You-Hua Zhang; Jian Tu
Journal:  BMC Bioinformatics       Date:  2020-07-28       Impact factor: 3.169

6.  Casimicrobium huifangae gen. nov., sp. nov., a Ubiquitous "Most-Wanted" Core Bacterial Taxon from Municipal Wastewater Treatment Plants.

Authors:  Yang Song; Cheng-Ying Jiang; Zong-Lin Liang; Bao-Jun Wang; Yong Jiang; Ye Yin; Hai-Zhen Zhu; Ya-Ling Qin; Rui-Xue Cheng; Zhi-Pei Liu; Yao Liu; Tao Jin; Philippe F-X Corvini; Korneel Rabaey; Ai-Jie Wang; Shuang-Jiang Liu
Journal:  Appl Environ Microbiol       Date:  2020-02-03       Impact factor: 4.792

7.  Direct Evidence for Deterministic Assembly of Bacterial Communities in Full-Scale Municipal Wastewater Treatment Facilities.

Authors:  Taegyu Kim; Sebastian Behrens; Timothy M LaPara
Journal:  Appl Environ Microbiol       Date:  2021-08-04       Impact factor: 4.792

8.  Different Engineering Designs Have Profoundly Different Impacts on the Microbiome and Nitrifying Bacterial Populations in Municipal Wastewater Treatment Bioreactors.

Authors:  Taegyu Kim; Sebastian F Behrens; Timothy M LaPara
Journal:  Appl Environ Microbiol       Date:  2021-08-26       Impact factor: 4.792

9.  Contrasting Patterns of the Resident and Active Rhizosphere Bacterial Communities of Phragmites Australis.

Authors:  Qi Zhou; Rujia He; Dayong Zhao; Jin Zeng; Zhongbo Yu; Qinglong L Wu
Journal:  Microb Ecol       Date:  2021-05-06       Impact factor: 4.552

Review 10.  Methanotrophs: Discoveries, Environmental Relevance, and a Perspective on Current and Future Applications.

Authors:  Simon Guerrero-Cruz; Annika Vaksmaa; Marcus A Horn; Helge Niemann; Maite Pijuan; Adrian Ho
Journal:  Front Microbiol       Date:  2021-05-14       Impact factor: 5.640

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