Literature DB >> 31085509

Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring bla CMY-2 and bla SHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries.

Joost Hordijk1, Aldert L Zomer2, Luis Ricardo Castellanos1, Linda van der Graaf-van Bloois1, Pilar Donado-Godoy3, Dik J Mevius1,4, Jaap A Wagenaar1,4.   

Abstract

The objective of this study was to elucidate the genetic and evolutionary relatedness of bla CMY-2- and bla SHV-12-carrying IncI1-Iγ plasmids. Phylogenomic analysis based on core genome alignments and gene presence/absence was performed for different IncI1-Iγ sequence types (STs). Most IncI1-Iγ/ST12 and IncI1-Iγ/ST231 plasmids had near-identical core genomes. The data suggest that widely occurring bla CMY-2-carrying IncI1-Iγ/ST12 plasmids originate from a common ancestor. In contrast, bla SHV-12 was inserted independently into different IncI1-Iγ/ST231-related plasmids.
Copyright © 2019 American Society for Microbiology.

Entities:  

Keywords:  IS1294; IS26; ISEcp1; S. Heidelberg; Salmonella Paratyphi B var. Java; Tn1721; blc; broiler; chicken; deoR; sugE

Year:  2019        PMID： 31085509      PMCID： PMC6591584          DOI： 10.1128/AAC.02546-18

Source DB:  PubMed          Journal:  Antimicrob Agents Chemother        ISSN： 0066-4804            Impact factor:   5.191


  40 in total

1.  Complete sequencing of IncI1 sequence type 2 plasmid pJIE512b indicates mobilization of blaCMY-2 from an IncA/C plasmid.

Authors:  Kaitlin A Tagg; Jonathan R Iredell; Sally R Partridge
Journal:  Antimicrob Agents Chemother       Date:  2014-06-02       Impact factor: 5.191

2.  Characterization of epidemic IncI1-Iγ plasmids harboring ambler class A and C genes in Escherichia coli and Salmonella enterica from animals and humans.

Authors:  Hilde Smith; Alex Bossers; Frank Harders; Guanghui Wu; Neil Woodford; Stefan Schwarz; Beatriz Guerra; Irene Rodríguez; Alieda van Essen-Zandbergen; Michael Brouwer; Dik Mevius
Journal:  Antimicrob Agents Chemother       Date:  2015-06-22       Impact factor: 5.191

3.  ST131 fimH22 Escherichia coli isolate with a blaCMY-2/IncI1/ST12 plasmid obtained from a patient with bloodstream infection: highly similar to E. coli isolates of broiler origin.

Authors:  Louise Roer; Søren Overballe-Petersen; Frank Hansen; Thor B Johannesen; Marc Stegger; Valeria Bortolaia; Pimlapas Leekitcharoenphon; Helle B Korsgaard; Anne Mette Seyfarth; Joël Mossong; Pierre Wattiau; Cécile Boland; Dennis S Hansen; Henrik Hasman; Anette M Hammerum; Rene S Hendriksen
Journal:  J Antimicrob Chemother       Date:  2019-03-01       Impact factor: 5.790

4.  Host-Specific Patterns of Genetic Diversity among IncI1-Iγ and IncK Plasmids Encoding CMY-2 β-Lactamase in Escherichia coli Isolates from Humans, Poultry Meat, Poultry, and Dogs in Denmark.

Authors:  Katrine Hartung Hansen; Valeria Bortolaia; Christine Ahl Nielsen; Jesper Boye Nielsen; Kristian Schønning; Yvonne Agersø; Luca Guardabassi
Journal:  Appl Environ Microbiol       Date:  2016-07-15       Impact factor: 4.792

5.  Distribution of acquired AmpC β-lactamase genes in Sydney, Australia.

Authors:  Kaitlin A Tagg; Andrew N Ginn; Xiuhong Jiang; Justin Ellem; Sally R Partridge; Jonathan R Iredell
Journal:  Diagn Microbiol Infect Dis       Date:  2015-06-04       Impact factor: 2.803

6.  In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.

Authors:  Alessandra Carattoli; Ea Zankari; Aurora García-Fernández; Mette Voldby Larsen; Ole Lund; Laura Villa; Frank Møller Aarestrup; Henrik Hasman
Journal:  Antimicrob Agents Chemother       Date:  2014-04-28       Impact factor: 5.191

7.  IncI1 plasmids associated with the spread of CMY-2, CTX-M-1 and SHV-12 in Escherichia coli of animal and human origin.

Authors:  M Accogli; D Fortini; M Giufrè; C Graziani; M Dolejska; A Carattoli; M Cerquetti
Journal:  Clin Microbiol Infect       Date:  2013-01-17       Impact factor: 8.067

8.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

9.  Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages.

Authors:  Mark de Been; Val F Lanza; María de Toro; Jelle Scharringa; Wietske Dohmen; Yu Du; Juan Hu; Ying Lei; Ning Li; Ave Tooming-Klunderud; Dick J J Heederik; Ad C Fluit; Marc J M Bonten; Rob J L Willems; Fernando de la Cruz; Willem van Schaik
Journal:  PLoS Genet       Date:  2014-12-18       Impact factor: 5.917

10.  Genomic Characterization of Extended-Spectrum Cephalosporin-Resistant Salmonella enterica in the Colombian Poultry Chain.

Authors:  Luis Ricardo Castellanos; Linda van der Graaf-van Bloois; Pilar Donado-Godoy; Maribel León; Viviana Clavijo; Alejandra Arévalo; Johan F Bernal; Dik J Mevius; Jaap A Wagenaar; Aldert Zomer; Joost Hordijk
Journal:  Front Microbiol       Date:  2018-10-26       Impact factor: 5.640
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  4 in total

Review 1.  Incompatibility Group I1 (IncI1) Plasmids: Their Genetics, Biology, and Public Health Relevance.

Authors:  Steven L Foley; Pravin R Kaldhone; Steven C Ricke; Jing Han
Journal:  Microbiol Mol Biol Rev       Date:  2021-04-28       Impact factor: 11.056

2.  Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America.

Authors:  L Ricardo Castellanos; Linda van der Graaf-van Bloois; Pilar Donado-Godoy; Kees Veldman; Francisco Duarte; María T Acuña; Claudia Jarquín; François-Xavier Weill; Dik J Mevius; Jaap A Wagenaar; Joost Hordijk; Aldert L Zomer
Journal:  Emerg Infect Dis       Date:  2020-06       Impact factor: 6.883

3.  Whole-genome analyses of extended-spectrum or AmpC β-lactamase-producing Escherichia coli isolates from companion dogs in Japan.

Authors:  Mayo Yasugi; Shingo Hatoya; Daisuke Motooka; Yuki Matsumoto; Shunsuke Shimamura; Hiroyuki Tani; Masaru Furuya; Keiichiro Mie; Masami Miyake; Shota Nakamura; Terumasa Shimada
Journal:  PLoS One       Date:  2021-02-05       Impact factor: 3.240

4.  Limited Genetic Diversity of blaCMY-2-Containing IncI1-pST12 Plasmids from Enterobacteriaceae of Human and Broiler Chicken Origin in The Netherlands.

Authors:  Evert P M den Drijver; Joep J J M Stohr; Jaco J Verweij; Carlo Verhulst; Francisca C Velkers; Arjan Stegeman; Marjolein F Q Kluytmans-van den Bergh; Jan A J W Kluytmans; I-Health Study Group
Journal:  Microorganisms       Date:  2020-11-08
  4 in total

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