Literature DB >> 31079192

Pseudomonas hutmensis sp. nov., a New Fluorescent Member of Pseudomonas putida Group.

Wei Xiang1, Shaowen Chen1, Daizhi Tian2, Chunhua Huang3, Tiexiang Gao4,5.   

Abstract

A rod-shaped, Gram-negative and aerobic bacterium, strain XWS2, was isolated from rhizosphere soil of a camphor tree in Hubei University of Chinese Medicine Huangjiahu Campus, Wuhan, China. Cells grew at 4-37 °C (optimum 28 °C), pH 5.0-9.0 (optimum 7.0) and with 0-5% NaCl (optimum 1%). Colonies growing on tryptone soybean agar are round, beige in color and approximately 2 mm in diameter after 24 h incubation at 28 °C. Pellicle formation during liquid culture and strong fluorescent pigment production on King's B medium are typical features of strain XWS2. The genome of XWS2 is 6,170,117 bp, containing 5682 predicted genes and 4770 genes are functionally annotated. Phylogenetic analysis based on 16S rRNA sequence showed that strain XWS2 formed an independent branch within the Pseudomonas putida group, with P. putida NBRC 14164T (99.86% similarity) and P. alkylphenolica KL28T (99.36% similarity) as the most closely related type strains. Genome sequence analysis based on average nucleotide identity and digital DNA-DNA hybridization are below the threshold values for species delineation. Phenotypic characteristics, physiological and biochemical tests also supported the strain represents a separate novel species within the Pseudomonas genus. The name Pseudomonas hutmensis sp. nov. is proposed, with type strain XWS2T (= CCTCC AB 2018189 T = KACC 19898T).

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Year:  2019        PMID: 31079192     DOI: 10.1007/s00284-019-01701-z

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  46 in total

Review 1.  The species concept for prokaryotes.

Authors:  R Rosselló-Mora; R Amann
Journal:  FEMS Microbiol Rev       Date:  2001-01       Impact factor: 16.408

Review 2.  Industrial biotechnology of Pseudomonas putida and related species.

Authors:  Ignacio Poblete-Castro; Judith Becker; Katrin Dohnt; Vitor Martins dos Santos; Christoph Wittmann
Journal:  Appl Microbiol Biotechnol       Date:  2012-02-18       Impact factor: 4.813

3.  Concordance between whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry and multilocus sequence analysis approaches in species discrimination within the genus Pseudomonas.

Authors:  Magdalena Mulet; Margarita Gomila; Claudia Scotta; David Sánchez; Jorge Lalucat; Elena García-Valdés
Journal:  Syst Appl Microbiol       Date:  2012-10       Impact factor: 4.022

4.  Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age.

Authors:  Jan P Meier-Kolthoff; Hans-Peter Klenk; Markus Göker
Journal:  Int J Syst Evol Microbiol       Date:  2014-02       Impact factor: 2.747

5.  DNA sequence-based analysis of the Pseudomonas species.

Authors:  Magdalena Mulet; Jorge Lalucat; Elena García-Valdés
Journal:  Environ Microbiol       Date:  2010-02-25       Impact factor: 5.491

Review 6.  Pseudomonas putida bacteremia in adult patients: five case reports and a review of the literature.

Authors:  Yusuke Yoshino; Takatoshi Kitazawa; Mahoko Kamimura; Keita Tatsuno; Yasuo Ota; Hiroshi Yotsuyanagi
Journal:  J Infect Chemother       Date:  2010-09-01       Impact factor: 2.211

7.  Shifting the genomic gold standard for the prokaryotic species definition.

Authors:  Michael Richter; Ramon Rosselló-Móra
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-23       Impact factor: 11.205

8.  Genome sequence-based species delimitation with confidence intervals and improved distance functions.

Authors:  Jan P Meier-Kolthoff; Alexander F Auch; Hans-Peter Klenk; Markus Göker
Journal:  BMC Bioinformatics       Date:  2013-02-21       Impact factor: 3.169

9.  Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology.

Authors:  Jacek Puchałka; Matthew A Oberhardt; Miguel Godinho; Agata Bielecka; Daniela Regenhardt; Kenneth N Timmis; Jason A Papin; Vítor A P Martins dos Santos
Journal:  PLoS Comput Biol       Date:  2008-10-31       Impact factor: 4.475

10.  LPSN--list of prokaryotic names with standing in nomenclature.

Authors:  Aidan C Parte
Journal:  Nucleic Acids Res       Date:  2013-11-15       Impact factor: 16.971

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