Literature DB >> 31076933

A novel formulation of an approximate valence bond model (AVB2) and its application to the tautomeric forms of porphyrin and porphycene.

Marta Hallay-Suszek1, Paweł Grochowski2, Bogdan Lesyng3,4.   

Abstract

This study presents a novel formulation of the approximate valence bond method, which can be applied as a very fast generator of the molecular potential energy function. The AVB2 model was formulated and parameterized for porphyrin and porphycene using results of quantum mechanical computations at the B3LYP/6-31G (d, p) level. The DFT potential energy, its gradients, and the Hessian-matrix elements, as well as effective atomic charges at local energy minima and transition states, were used for the parameterization of the AVB2 Hamiltonian matrix. The AVB2 method, and in particular its anharmonic version, very well reproduce the potential energy maps for all representative geometries of the studied systems, including harmonic frequencies, and possible proton translocations. For validation of the method, we performed molecular dynamics simulations for isolated molecules accounting for internal double proton transfer processes, which are strongly correlated with changes of the electronic charge density. The simulated power spectra were compared with the experimental infrared spectra. More precise simulations of IR spectra at the classical and quantum dynamics levels, as well as extensions of the AVB2 parameterization to electronic excited states, are the subject of further research.

Entities:  

Keywords:  AVB2; Molecular dynamics; Porphycene; Porphyrin; Potential energy surface parameterization; Proton transfer; Quantum computations

Year:  2019        PMID: 31076933     DOI: 10.1007/s00894-019-4022-7

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  5 in total

1.  Constructing multidimensional molecular potential energy surfaces from ab initio data.

Authors:  T Hollebeek; T S Ho; H Rabitz
Journal:  Annu Rev Phys Chem       Date:  1999       Impact factor: 12.703

2.  Vibrations and hydrogen bonding in porphycene.

Authors:  Sylwester Gawinkowski; Łukasz Walewski; Alexander Vdovin; Alkwin Slenczka; Stephane Rols; Mark R Johnson; Bogdan Lesyng; Jacek Waluk
Journal:  Phys Chem Chem Phys       Date:  2012-03-13       Impact factor: 3.676

3.  Vibrational gating of double hydrogen tunneling in porphycene.

Authors:  Michał Gil; Jacek Waluk
Journal:  J Am Chem Soc       Date:  2007-02-07       Impact factor: 15.419

4.  Car-Parrinello molecular dynamics study of the intramolecular vibrational mode-sensitive double proton-transfer mechanisms in porphycene.

Authors:  Łukasz Walewski; Jacek Waluk; Bogdan Lesyng
Journal:  J Phys Chem A       Date:  2010-02-18       Impact factor: 2.781

5.  Quantum-dynamical picture of a multistep enzymatic process: reaction catalyzed by phospholipase A(2).

Authors:  P Bała; P Grochowski; K Nowiński; B Lesyng; J A McCammon
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

  5 in total

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