Literature DB >> 31074622

Development of Adverse Outcome Pathway for PPARγ Antagonism Leading to Pulmonary Fibrosis and Chemical Selection for Its Validation: ToxCast Database and a Deep Learning Artificial Neural Network Model-Based Approach.

Jaeseong Jeong1, Natalia Garcia-Reyero2, Lyle Burgoon2, Edward Perkins2, Taehyun Park1, Changheon Kim3, Ji-Yeon Roh4, Jinhee Choi1.   

Abstract

Exposure to certain chemicals such as disinfectants through inhalation is suspected to be involved in the development of pulmonary fibrosis, a lung disease in which lung tissue becomes damaged and scarred. Pulmonary fibrosis is known to be regulated by transforming growth factor β (TGF-β) and peroxisome proliferator-activated receptor gamma (PPARγ). Here, we developed an adverse outcome pathway (AOP) to better define the linkage of PPARγ antagonism to the adverse outcome of pulmonary fibrosis. We then conducted a systematic analysis to identify potential chemicals involved in this AOP, using the ToxCast database and deep learning artificial neural network models. We identified chemicals bearing a potential inhalation hazard and exposure hazards from the database that could be related to this AOP. For chemicals that were not present in the ToxCast database, multilayer perceptron models were developed based on the ToxCast assays related to the AOP. The reactivity of ToxCast untested chemicals was then predicted using these deep learning models. Both approaches identified a set of chemicals that could be used to validate the AOP. This study suggests that chemicals categorized using an existing database such as ToxCast can be used to validate an AOP and that deep learning approaches can be used to characterize a range of potential active chemicals for an AOP of interest.

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Year:  2019        PMID: 31074622     DOI: 10.1021/acs.chemrestox.9b00040

Source DB:  PubMed          Journal:  Chem Res Toxicol        ISSN: 0893-228X            Impact factor:   3.739


  7 in total

1.  In silico approaches in organ toxicity hazard assessment: Current status and future needs for predicting heart, kidney and lung toxicities.

Authors:  Arianna Bassan; Vinicius M Alves; Alexander Amberg; Lennart T Anger; Lisa Beilke; Andreas Bender; Autumn Bernal; Mark T D Cronin; Jui-Hua Hsieh; Candice Johnson; Raymond Kemper; Moiz Mumtaz; Louise Neilson; Manuela Pavan; Amy Pointon; Julia Pletz; Patricia Ruiz; Daniel P Russo; Yogesh Sabnis; Reena Sandhu; Markus Schaefer; Lidiya Stavitskaya; David T Szabo; Jean-Pierre Valentin; David Woolley; Craig Zwickl; Glenn J Myatt
Journal:  Comput Toxicol       Date:  2021-09-13

2.  Transcriptomic Changes and the Roles of Cannabinoid Receptors and PPARγ in Developmental Toxicities Following Exposure to Δ9-Tetrahydrocannabinol and Cannabidiol.

Authors:  Zacharias Pandelides; Neelakanteswar Aluru; Cammi Thornton; Haley E Watts; Kristine L Willett
Journal:  Toxicol Sci       Date:  2021-07-16       Impact factor: 4.849

3.  Collaborative efforts are needed among the scientific community to advance the adverse outcome pathway concept in areas of radiation risk assessment.

Authors:  Vinita Chauhan; Daniel Villeneuve; Donald Cool
Journal:  Int J Radiat Biol       Date:  2021-01-20       Impact factor: 2.694

Review 4.  Quantitative adverse outcome pathway (qAOP) models for toxicity prediction.

Authors:  Nicoleta Spinu; Mark T D Cronin; Steven J Enoch; Judith C Madden; Andrew P Worth
Journal:  Arch Toxicol       Date:  2020-05-18       Impact factor: 5.153

5.  From Causal Networks to Adverse Outcome Pathways: A Developmental Neurotoxicity Case Study.

Authors:  Živa Ramšak; Vid Modic; Roman A Li; Colette Vom Berg; Anze Zupanic
Journal:  Front Toxicol       Date:  2022-03-07

6.  Deriving time-concordant event cascades from gene expression data: A case study for Drug-Induced Liver Injury (DILI).

Authors:  Anika Liu; Namshik Han; Jordi Munoz-Muriedas; Andreas Bender
Journal:  PLoS Comput Biol       Date:  2022-06-10       Impact factor: 4.779

7.  Novel QSAR Models for Molecular Initiating Event Modeling in Two Intersecting Adverse Outcome Pathways Based Pulmonary Fibrosis Prediction for Biocidal Mixtures.

Authors:  Myungwon Seo; Chong Hak Chae; Yuno Lee; Ha Ryong Kim; Jongwoon Kim
Journal:  Toxics       Date:  2021-03-16
  7 in total

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