Literature DB >> 31074092

Global test for high-dimensional mediation: Testing groups of potential mediators.

Vera Djordjilović1, Christian M Page2,3, Jon Michael Gran1,2, Therese H Nøst4, Torkjel M Sandanger4, Marit B Veierød1, Magne Thoresen1.   

Abstract

We address the problem of testing whether a possibly high-dimensional vector may act as a mediator between some exposure variable and the outcome of interest. We propose a global test for mediation, which combines a global test with the intersection-union principle. We discuss theoretical properties of our approach and conduct simulation studies that demonstrate that it performs equally well or better than its competitor. We also propose a multiple testing procedure, ScreenMin, that provides asymptotic control of either familywise error rate or false discovery rate when multiple groups of potential mediators are tested simultaneously. We apply our approach to data from a large Norwegian cohort study, where we look at the hypothesis that smoking increases the risk of lung cancer by modifying the level of DNA methylation.
© 2019 John Wiley & Sons, Ltd.

Entities:  

Keywords:  false discovery rate; familywise error rate; high-dimensional data; multiple mediators

Mesh:

Year:  2019        PMID: 31074092     DOI: 10.1002/sim.8199

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  11 in total

Review 1.  Methodological challenges in constructing DNA methylation risk scores.

Authors:  Anke Hüls; Darina Czamara
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2.  Bayesian hierarchical models for high-dimensional mediation analysis with coordinated selection of correlated mediators.

Authors:  Yanyi Song; Xiang Zhou; Jian Kang; Max T Aung; Min Zhang; Wei Zhao; Belinda L Needham; Sharon L R Kardia; Yongmei Liu; John D Meeker; Jennifer A Smith; Bhramar Mukherjee
Journal:  Stat Med       Date:  2021-08-17       Impact factor: 2.497

3.  Sequential Pathway Inference for Multimodal Neuroimaging Analysis.

Authors:  Lexin Li; Chengchun Shi; Tengfei Guo; William J Jagust
Journal:  Stat       Date:  2021-10-15

4.  Mediation analysis for survival data with High-Dimensional mediators.

Authors:  Haixiang Zhang; Yinan Zheng; Lifang Hou; Cheng Zheng; Lei Liu
Journal:  Bioinformatics       Date:  2021-08-03       Impact factor: 6.931

5.  High-Dimensional Mediation Analysis Based on Additive Hazards Model for Survival Data.

Authors:  Yidan Cui; Chengwen Luo; Linghao Luo; Zhangsheng Yu
Journal:  Front Genet       Date:  2021-12-23       Impact factor: 4.599

6.  Role of DNA methylation on the association between physical activity and cardiovascular diseases: results from the longitudinal multi-ethnic study of atherosclerosis (MESA) cohort.

Authors:  Hangchuan Shi; Deborah J Ossip; Nicole L Mayo; Daniel A Lopez; Robert C Block; Wendy S Post; Alain G Bertoni; Jingzhong Ding; Si Chen; Chen Yan; Zidian Xie; Ina Hoeschele; Yongmei Liu; Dongmei Li
Journal:  BMC Genomics       Date:  2021-11-03       Impact factor: 3.969

7.  High-throughput mediation analysis of human proteome and metabolome identifies mediators of post-bariatric surgical diabetes control.

Authors:  Jonathan M Dreyfuss; Yixing Yuchi; Xuehong Dong; Vissarion Efthymiou; Hui Pan; Donald C Simonson; Ashley Vernon; Florencia Halperin; Pratik Aryal; Anish Konkar; Yinong Sebastian; Brandon W Higgs; Joseph Grimsby; Cristina M Rondinone; Simon Kasif; Barbara B Kahn; Kathleen Foster; Randy Seeley; Allison Goldfine; Vera Djordjilović; Mary Elizabeth Patti
Journal:  Nat Commun       Date:  2021-11-29       Impact factor: 17.694

8.  HIMA2: high-dimensional mediation analysis and its application in epigenome-wide DNA methylation data.

Authors:  Chamila Perera; Haixiang Zhang; Yinan Zheng; Lifang Hou; Annie Qu; Cheng Zheng; Ke Xie; Lei Liu
Journal:  BMC Bioinformatics       Date:  2022-07-25       Impact factor: 3.307

Review 9.  Statistical methods for mediation analysis in the era of high-throughput genomics: Current successes and future challenges.

Authors:  Ping Zeng; Zhonghe Shao; Xiang Zhou
Journal:  Comput Struct Biotechnol J       Date:  2021-05-26       Impact factor: 7.271

10.  Challenges Raised by Mediation Analysis in a High-Dimension Setting.

Authors:  Michaël G B Blum; Linda Valeri; Olivier François; Solène Cadiou; Valérie Siroux; Johanna Lepeule; Rémy Slama
Journal:  Environ Health Perspect       Date:  2020-05-06       Impact factor: 9.031

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