Literature DB >> 31065567

Three-dimensional conditional random field for the dermal-epidermal junction segmentation.

Julie Robic1,2, Benjamin Perret2, Alex Nkengne1, Michel Couprie2, Hugues Talbot3.   

Abstract

The segmentation of the dermal-epidermal junction (DEJ) in in vivo confocal images represents a challenging task due to uncertainty in visual labeling and complex dependencies between skin layers. We propose a method to segment the DEJ surface, which combines random forest classification with spatial regularization based on a three-dimensional conditional random field (CRF) to improve the classification robustness. The CRF regularization introduces spatial constraints consistent with skin anatomy and its biological behavior. We propose to specify the interaction potentials between pixels according to their depth and their relative position to each other to model skin biological properties. The proposed approach adds regularity to the classification by prohibiting inconsistent transitions between skin layers. As a result, it improves the sensitivity and specificity of the classification results.

Keywords:  biomedical imaging; in vivo microscopy; machine learning; reflectance confocal microscopy

Year:  2019        PMID: 31065567      PMCID: PMC6487290          DOI: 10.1117/1.JMI.6.2.024003

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  15 in total

1.  Skin aging: in vivo microscopic assessment of epidermal and dermal changes by means of confocal microscopy.

Authors:  Caterina Longo; Alice Casari; Francesca Beretti; Anna Maria Cesinaro; Giovanni Pellacani
Journal:  J Am Acad Dermatol       Date:  2011-10-14       Impact factor: 11.527

2.  Proposal for an in vivo histopathologic scoring system for skin aging by means of confocal microscopy.

Authors:  Caterina Longo; Alice Casari; Barbara De Pace; Silvia Simonazzi; Giovanna Mazzaglia; Giovanni Pellacani
Journal:  Skin Res Technol       Date:  2012-06-07       Impact factor: 2.365

3.  Fully automatic segmentation of brain tumor images using support vector machine classification in combination with hierarchical conditional random field regularization.

Authors:  Stefan Bauer; Lutz-P Nolte; Mauricio Reyes
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

4.  Protein fold recognition using segmentation conditional random fields (SCRFs).

Authors:  Yan Liu; Jaime Carbonell; Peter Weigele; Vanathi Gopalakrishnan
Journal:  J Comput Biol       Date:  2006-03       Impact factor: 1.479

Review 5.  Reflectance confocal microscopy for in vivo skin imaging.

Authors:  Piergiacomo Calzavara-Pinton; Caterina Longo; Marina Venturini; Raffaella Sala; Giovanni Pellacani
Journal:  Photochem Photobiol       Date:  2008 Nov-Dec       Impact factor: 3.421

Review 6.  Natural and sun-induced aging of human skin.

Authors:  Laure Rittié; Gary J Fisher
Journal:  Cold Spring Harb Perspect Med       Date:  2015-01-05       Impact factor: 6.915

7.  Automated delineation of dermal-epidermal junction in reflectance confocal microscopy image stacks of human skin.

Authors:  Sila Kurugol; Kivanc Kose; Jennifer G Dy; Dana H Brooks; Milind Rajadhyaksha; Brian Park
Journal:  J Invest Dermatol       Date:  2014-09-03       Impact factor: 8.551

8.  A Marked Poisson Process Driven Latent Shape Model for 3D Segmentation of Reflectance Confocal Microscopy Image Stacks of Human Skin.

Authors:  Sindhu Ghanta; Michael I Jordan; Kivanc Kose; Dana H Brooks; Milind Rajadhyaksha; Jennifer G Dy
Journal:  IEEE Trans Image Process       Date:  2016-10-05       Impact factor: 10.856

9.  Reflectance confocal microscopy as a second-level examination in skin oncology improves diagnostic accuracy and saves unnecessary excisions: a longitudinal prospective study.

Authors:  G Pellacani; P Pepe; A Casari; C Longo
Journal:  Br J Dermatol       Date:  2014-10-19       Impact factor: 9.302

10.  Automated Segmentation of Skin Strata in Reflectance Confocal Microscopy Depth Stacks.

Authors:  Samuel C Hames; Marco Ardigò; H Peter Soyer; Andrew P Bradley; Tarl W Prow
Journal:  PLoS One       Date:  2016-04-18       Impact factor: 3.240

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  3 in total

1.  In vivo microscopy as an adjunctive tool to guide detection, diagnosis, and treatment.

Authors:  Kevin W Bishop; Kristen C Maitland; Milind Rajadhyaksha; Jonathan T C Liu
Journal:  J Biomed Opt       Date:  2022-04       Impact factor: 3.758

Review 2.  Automating reflectance confocal microscopy image analysis for dermatological research: a review.

Authors:  Imane Lboukili; Georgios Stamatas; Xavier Descombes
Journal:  J Biomed Opt       Date:  2022-07       Impact factor: 3.758

3.  Skin strata delineation in reflectance confocal microscopy images using recurrent convolutional networks with attention.

Authors:  Alican Bozkurt; Kivanc Kose; Jaume Coll-Font; Christi Alessi-Fox; Dana H Brooks; Jennifer G Dy; Milind Rajadhyaksha
Journal:  Sci Rep       Date:  2021-06-15       Impact factor: 4.379

  3 in total

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