Literature DB >> 31065346

Linking Gaussian process regression with data-driven manifold embeddings for nonlinear data fusion.

Seungjoon Lee1, Felix Dietrich1, George E Karniadakis2, Ioannis G Kevrekidis1.   

Abstract

In statistical modelling with Gaussian process regression, it has been shown that combining (few) high-fidelity data with (many) low-fidelity data can enhance prediction accuracy, compared to prediction based on the few high-fidelity data only. Such information fusion techniques for multi-fidelity data commonly approach the high-fidelity model f h(t) as a function of two variables (t, s), and then use f l(t) as the s data. More generally, the high-fidelity model can be written as a function of several variables (t, s 1, s 2….); the low-fidelity model f l and, say, some of its derivatives can then be substituted for these variables. In this paper, we will explore mathematical algorithms for multi-fidelity information fusion that use such an approach towards improving the representation of the high-fidelity function with only a few training data points. Given that f h may not be a simple function-and sometimes not even a function-of f l, we demonstrate that using additional functions of t, such as derivatives or shifts of f l, can drastically improve the approximation of f h through Gaussian processes. We also point out a connection with 'embedology' techniques from topology and dynamical systems. Our illustrative examples range from instructive caricatures to computational biology models, such as Hodgkin-Huxley neural oscillations.

Entities:  

Keywords:  machine learning; multi-fidelity data; multi-resolution simulation

Year:  2019        PMID: 31065346      PMCID: PMC6501345          DOI: 10.1098/rsfs.2018.0083

Source DB:  PubMed          Journal:  Interface Focus        ISSN: 2042-8898            Impact factor:   3.906


  10 in total

1.  A quantitative description of membrane current and its application to conduction and excitation in nerve.

Authors:  A L HODGKIN; A F HUXLEY
Journal:  J Physiol       Date:  1952-08       Impact factor: 5.182

2.  A statistical framework for genomic data fusion.

Authors:  Gert R G Lanckriet; Tijl De Bie; Nello Cristianini; Michael I Jordan; William Stafford Noble
Journal:  Bioinformatics       Date:  2004-05-06       Impact factor: 6.937

3.  Multi-fidelity modelling via recursive co-kriging and Gaussian-Markov random fields.

Authors:  P Perdikaris; D Venturi; J O Royset; G E Karniadakis
Journal:  Proc Math Phys Eng Sci       Date:  2015-07-08       Impact factor: 2.704

4.  Detecting intrinsic slow variables in stochastic dynamical systems by anisotropic diffusion maps.

Authors:  Amit Singer; Radek Erban; Ioannis G Kevrekidis; Ronald R Coifman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-18       Impact factor: 11.205

5.  Determining embedding dimension for phase-space reconstruction using a geometrical construction.

Authors: 
Journal:  Phys Rev A       Date:  1992-03-15       Impact factor: 3.140

6.  Nonlinear information fusion algorithms for data-efficient multi-fidelity modelling.

Authors:  P Perdikaris; M Raissi; A Damianou; N D Lawrence; G E Karniadakis
Journal:  Proc Math Phys Eng Sci       Date:  2017-02       Impact factor: 2.704

Review 7.  Combination of similarity rankings using data fusion.

Authors:  Peter Willett
Journal:  J Chem Inf Model       Date:  2013-01-16       Impact factor: 4.956

Review 8.  Machine learning applications in genetics and genomics.

Authors:  Maxwell W Libbrecht; William Stafford Noble
Journal:  Nat Rev Genet       Date:  2015-05-07       Impact factor: 53.242

9.  Synthesizing developmental trajectories.

Authors:  Paul Villoutreix; Joakim Andén; Bomyi Lim; Hang Lu; Ioannis G Kevrekidis; Amit Singer; Stanislav Y Shvartsman
Journal:  PLoS Comput Biol       Date:  2017-09-18       Impact factor: 4.475

Review 10.  Machine learning and its applications to biology.

Authors:  Adi L Tarca; Vincent J Carey; Xue-wen Chen; Roberto Romero; Sorin Drăghici
Journal:  PLoS Comput Biol       Date:  2007-06       Impact factor: 4.475

  10 in total
  1 in total

1.  Coarse-scale PDEs from fine-scale observations via machine learning.

Authors:  Seungjoon Lee; Mahdi Kooshkbaghi; Konstantinos Spiliotis; Constantinos I Siettos; Ioannis G Kevrekidis
Journal:  Chaos       Date:  2020-01       Impact factor: 3.642

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.