Literature DB >> 31059230

Extractive Ratio Analysis NMR Spectroscopy for Metabolite Identification in Complex Biological Mixtures.

Liladhar Paudel, G A Nagana Gowda, Daniel Raftery1.   

Abstract

The complexity of biological mixtures continues to challenge efforts aimed at unknown metabolite identification in the metabolomics field. To address this challenge, we provide a new method to identify related peaks from individual metabolites in complex NMR spectra. Extractive ratio analysis NMR spectroscopy (E-RANSY) builds on our previously described ratio analysis method [ Wei et al. Anal. Chem. 2011 , 83 , 7616 - 7623 ] and exploits the simplified NMR spectra provided by the extraction of metabolites under varied pH conditions. Under such conditions, metabolites from the same biological specimen are extracted differentially, and the resulting NMR spectra exhibit characteristics favorable for unraveling unknown metabolite peaks using ratio analysis. We demonstrate the utility of the E-RANSY method by extracting carboxylic acid containing metabolites from human urine, one of the highly complex biological mixtures encountered in the metabolomics field. E-RANSY performs better than STOCSY and the original RANSY method and offers new avenues to identify unknown metabolites in complex biological mixtures.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31059230      PMCID: PMC8164567          DOI: 10.1021/acs.analchem.9b01235

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  25 in total

1.  Metabolite identification via the Madison Metabolomics Consortium Database.

Authors:  Qiu Cui; Ian A Lewis; Adrian D Hegeman; Mark E Anderson; Jing Li; Christopher F Schulte; William M Westler; Hamid R Eghbalnia; Michael R Sussman; John L Markley
Journal:  Nat Biotechnol       Date:  2008-02       Impact factor: 54.908

2.  Statistical spectroscopic tools for biomarker discovery and systems medicine.

Authors:  Steven L Robinette; John C Lindon; Jeremy K Nicholson
Journal:  Anal Chem       Date:  2013-05-23       Impact factor: 6.986

3.  Identification of 4-deoxythreonic acid present in human urine using HPLC and NMR techniques.

Authors:  Emmanuel Appiah-Amponsah; Narasimhamurthy Shanaiah; G A Nagana Gowda; Kwadwo Owusu-Sarfo; Tao Ye; Daniel Raftery
Journal:  J Pharm Biomed Anal       Date:  2009-06-12       Impact factor: 3.935

4.  Dansylhydrazine Isotope Labeling LC-MS for Comprehensive Carboxylic Acid Submetabolome Profiling.

Authors:  Shuang Zhao; Liang Li
Journal:  Anal Chem       Date:  2018-10-31       Impact factor: 6.986

5.  Deconvolution of two-dimensional NMR spectra by fast maximum likelihood reconstruction: application to quantitative metabolomics.

Authors:  Roger A Chylla; Kaifeng Hu; James J Ellinger; John L Markley
Journal:  Anal Chem       Date:  2011-05-26       Impact factor: 6.986

6.  HMDB: the Human Metabolome Database.

Authors:  David S Wishart; Dan Tzur; Craig Knox; Roman Eisner; An Chi Guo; Nelson Young; Dean Cheng; Kevin Jewell; David Arndt; Summit Sawhney; Chris Fung; Lisa Nikolai; Mike Lewis; Marie-Aude Coutouly; Ian Forsythe; Peter Tang; Savita Shrivastava; Kevin Jeroncic; Paul Stothard; Godwin Amegbey; David Block; David D Hau; James Wagner; Jessica Miniaci; Melisa Clements; Mulu Gebremedhin; Natalie Guo; Ying Zhang; Gavin E Duggan; Glen D Macinnis; Alim M Weljie; Reza Dowlatabadi; Fiona Bamforth; Derrick Clive; Russ Greiner; Liang Li; Tom Marrie; Brian D Sykes; Hans J Vogel; Lori Querengesser
Journal:  Nucleic Acids Res       Date:  2007-01       Impact factor: 16.971

7.  Unified and isomer-specific NMR metabolomics database for the accurate analysis of (13)C-(1)H HSQC spectra.

Authors:  Kerem Bingol; Da-Wei Li; Lei Bruschweiler-Li; Oscar A Cabrera; Timothy Megraw; Fengli Zhang; Rafael Brüschweiler
Journal:  ACS Chem Biol       Date:  2014-11-05       Impact factor: 5.100

8.  13C Metabolomics: NMR and IROA for Unknown Identification.

Authors:  Chaevien S Clendinen; Gregory S Stupp; Bing Wang; Timothy J Garrett; Arthur S Edison
Journal:  Curr Metabolomics       Date:  2016-08

9.  BioMagResBank.

Authors:  Eldon L Ulrich; Hideo Akutsu; Jurgen F Doreleijers; Yoko Harano; Yannis E Ioannidis; Jundong Lin; Miron Livny; Steve Mading; Dimitri Maziuk; Zachary Miller; Eiichi Nakatani; Christopher F Schulte; David E Tolmie; R Kent Wenger; Hongyang Yao; John L Markley
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971

10.  Expanding the limits of human blood metabolite quantitation using NMR spectroscopy.

Authors:  G A Nagana Gowda; Yashas N Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2014-12-08       Impact factor: 6.986

View more
  2 in total

1.  Accurate and Efficient Determination of Unknown Metabolites in Metabolomics by NMR-Based Molecular Motif Identification.

Authors:  Cheng Wang; Bo Zhang; István Timári; Árpád Somogyi; Da-Wei Li; Haley E Adcox; John S Gunn; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2019-12-03       Impact factor: 6.986

Review 2.  Automatic 1D 1H NMR Metabolite Quantification for Bioreactor Monitoring.

Authors:  Roy Chih Chung Wang; David A Campbell; James R Green; Miroslava Čuperlović-Culf
Journal:  Metabolites       Date:  2021-03-09
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.