Literature DB >> 31056419

Structure and Assembly of the Enterohemorrhagic Escherichia coli Type 4 Pilus.

Benjamin Bardiaux1, Gisele Cardoso de Amorim2, Areli Luna Rico3, Weili Zheng4, Ingrid Guilvout5, Camille Jollivet5, Michael Nilges1, Edward H Egelman4, Nadia Izadi-Pruneyre6, Olivera Francetic7.   

Abstract

Bacterial type 4a pili are dynamic surface filaments that promote bacterial adherence, motility, and macromolecular transport. Their genes are highly conserved among enterobacteria and their expression in enterohemorrhagic Escherichia coli (EHEC) promotes adhesion to intestinal epithelia and pro-inflammatory signaling. To define the molecular basis of EHEC pilus assembly, we determined the structure of the periplasmic domain of its major subunit PpdD (PpdDp), a prototype of an enterobacterial pilin subfamily containing two disulfide bonds. The structure of PpdDp, determined by NMR, was then docked into the density envelope of purified EHEC pili obtained by cryoelectron microscopy (cryo-EM). Cryo-EM reconstruction of EHEC pili at ∼8 Å resolution revealed extremely high pilus flexibility correlating with a large extended region of the pilin stem. Systematic mutagenesis combined with functional and interaction analyses identified charged residues essential for pilus assembly. Structural information on exposed regions and interfaces between EHEC pilins is relevant for vaccine and drug discovery.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  EHEC; Escherichia coli; NMR; cryo-EM; hemorrhagic coli pilus (HCP); molecular modeling; pilin structure; pilus assembly; type 4 pili; type II secretion system

Mesh:

Substances:

Year:  2019        PMID: 31056419      PMCID: PMC7003672          DOI: 10.1016/j.str.2019.03.021

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  56 in total

1.  A robust algorithm for the reconstruction of helical filaments using single-particle methods.

Authors:  E H Egelman
Journal:  Ultramicroscopy       Date:  2000-12       Impact factor: 2.689

2.  Refinement of protein structures in explicit solvent.

Authors:  Jens P Linge; Mark A Williams; Christian A E M Spronk; Alexandre M J J Bonvin; Michael Nilges
Journal:  Proteins       Date:  2003-02-15

3.  Detailed structural and assembly model of the type II secretion pilus from sparse data.

Authors:  Manuel Campos; Michaël Nilges; David A Cisneros; Olivera Francetic
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-02       Impact factor: 11.205

Review 4.  Type IV pili: e pluribus unum?

Authors:  Vladimir Pelicic
Journal:  Mol Microbiol       Date:  2008-04-08       Impact factor: 3.501

5.  Evol and ProDy for bridging protein sequence evolution and structural dynamics.

Authors:  Ahmet Bakan; Anindita Dutta; Wenzhi Mao; Ying Liu; Chakra Chennubhotla; Timothy R Lezon; Ivet Bahar
Journal:  Bioinformatics       Date:  2014-05-21       Impact factor: 6.937

6.  Pseudopilin residue E5 is essential for recruitment by the type 2 secretion system assembly platform.

Authors:  Mangayarkarasi Nivaskumar; Javier Santos-Moreno; Christian Malosse; Nathalie Nadeau; Julia Chamot-Rooke; Guy Tran Van Nhieu; Olivera Francetic
Journal:  Mol Microbiol       Date:  2016-07-05       Impact factor: 3.501

7.  TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts.

Authors:  Yang Shen; Frank Delaglio; Gabriel Cornilescu; Ad Bax
Journal:  J Biomol NMR       Date:  2009-06-23       Impact factor: 2.835

8.  Natural DNA uptake by Escherichia coli.

Authors:  Sunita Sinha; Rosemary J Redfield
Journal:  PLoS One       Date:  2012-04-19       Impact factor: 3.240

Review 9.  Exceptionally widespread nanomachines composed of type IV pilins: the prokaryotic Swiss Army knives.

Authors:  Jamie-Lee Berry; Vladimir Pelicic
Journal:  FEMS Microbiol Rev       Date:  2014-12-04       Impact factor: 16.408

10.  CCMpred--fast and precise prediction of protein residue-residue contacts from correlated mutations.

Authors:  Stefan Seemayer; Markus Gruber; Johannes Söding
Journal:  Bioinformatics       Date:  2014-07-26       Impact factor: 6.937

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  10 in total

Review 1.  More than a feeling: microscopy approaches to understanding surface-sensing mechanisms.

Authors:  Katherine J Graham; Lori L Burrows
Journal:  J Bacteriol       Date:  2020-10-19       Impact factor: 3.490

2.  Cryo-EM structure of an extracellular Geobacter OmcE cytochrome filament reveals tetrahaem packing.

Authors:  Fengbin Wang; Khawla Mustafa; Victor Suciu; Komal Joshi; Chi H Chan; Sol Choi; Zhangli Su; Dong Si; Allon I Hochbaum; Edward H Egelman; Daniel R Bond
Journal:  Nat Microbiol       Date:  2022-07-07       Impact factor: 30.964

3.  Dynamics of a type 2 secretion system pseudopilus unraveled by complementary approaches.

Authors:  Benjamin Bardiaux; Florence Cordier; Sébastien Brier; Aracelys López-Castilla; Nadia Izadi-Pruneyre; Michael Nilges
Journal:  J Biomol NMR       Date:  2019-05-23       Impact factor: 2.835

4.  Architecture of the flexible tail tube of bacteriophage SPP1.

Authors:  Maximilian Zinke; Katrin A A Sachowsky; Carl Öster; Sophie Zinn-Justin; Raimond Ravelli; Gunnar F Schröder; Michael Habeck; Adam Lange
Journal:  Nat Commun       Date:  2020-11-13       Impact factor: 14.919

Review 5.  Structure Determination of Microtubules and Pili: Past, Present, and Future Directions.

Authors:  James A Garnett; Joseph Atherton
Journal:  Front Mol Biosci       Date:  2022-01-14

6.  The Type IV Pilus of Plasmid TP114 Displays Adhesins Conferring Conjugation Specificity and Is Important for DNA Transfer in the Mouse Gut Microbiota.

Authors:  Nancy Allard; Kevin Neil; Frédéric Grenier; Sébastien Rodrigue
Journal:  Microbiol Spectr       Date:  2022-03-16

7.  Cryo-electron microscopy reveals two distinct type IV pili assembled by the same bacterium.

Authors:  Alexander Neuhaus; Muniyandi Selvaraj; Ralf Salzer; Julian D Langer; Kerstin Kruse; Lennart Kirchner; Kelly Sanders; Bertram Daum; Beate Averhoff; Vicki A M Gold
Journal:  Nat Commun       Date:  2020-05-06       Impact factor: 14.919

Review 8.  Structure and function of minor pilins of type IV pili.

Authors:  Theis Jacobsen; Benjamin Bardiaux; Olivera Francetic; Nadia Izadi-Pruneyre; Michael Nilges
Journal:  Med Microbiol Immunol       Date:  2019-11-29       Impact factor: 3.402

9.  Repertoire of morphable proteins in an organism.

Authors:  Keisuke Izumi; Eitaro Saho; Ayuka Kutomi; Fumiaki Tomoike; Tetsuji Okada
Journal:  PeerJ       Date:  2020-02-11       Impact factor: 2.984

10.  CryoEM structure of the type IVa pilus secretin required for natural competence in Vibrio cholerae.

Authors:  Sara J Weaver; Davi R Ortega; Matthew H Sazinsky; Triana N Dalia; Ankur B Dalia; Grant J Jensen
Journal:  Nat Commun       Date:  2020-10-08       Impact factor: 17.694

  10 in total

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