Literature DB >> 31045295

Genome-wide association studies revealed candidate genes for tail fat deposition and body size in the Hulun Buir sheep.

Tongyu Zhang1, Hongding Gao2, Goutam Sahana2, Yanjun Zan3, Hongying Fan1, Jiaxin Liu1, Liangyu Shi1, Hongwei Wang4, Lixin Du1, Lixian Wang1, Fuping Zhao1.   

Abstract

Fat-tailed sheep have a unique characteristic of depositing fat in their tails. In the present study, we conducted genome-wide association studies (GWAS) on traits related to tail fat deposition and body size in the Hulun Buir sheep. A total number of 300 individuals belonging to two fat-tailed lines of the Hulun Buir sheep breed genotyped with the Ovine Infinium HD SNP BeadChip were included in the current study. Two mixed models, one for continuous and one for binary phenotypic traits, were employed to analyse ten traits, that is, body length (BL), body height (BH), chest girth (CG), tail length (TL), tail width (TW), tail circumference (TC), carcass weight (CW), tail fat weight (TF), ratio of CW to TF (RCT) and tail type (TT). We identified 7, 6, 7, 2, 10 and 1 SNPs significantly associated with traits TF, CW, RCT, TW, TT and CG, respectively. Their associated genomic regions harboured 42 positional candidate genes. Out of them, 13 candidate genes including SMURF2, FBF1, DTNBP1, SETD7 and RBM11 have been associated with fat metabolism in sheep. The RBM11 gene has already been identified in a previous study on signatures of selection in this specific sheep population. Two more genes, that is, SMARCA5 and GAB1 were associated with body size in sheep. The present study has identified candidate genes that might be implicated in tail fat deposition and body size in sheep.
© 2019 Blackwell Verlag GmbH.

Entities:  

Keywords:  Hulun Buir sheep; candidate genes; fat deposition; genome-wide association study; tail type

Mesh:

Year:  2019        PMID: 31045295     DOI: 10.1111/jbg.12402

Source DB:  PubMed          Journal:  J Anim Breed Genet        ISSN: 0931-2668            Impact factor:   2.380


  15 in total

1.  Genetic Polymorphisms of IGF1 and IGF1R Genes and Their Effects on Growth Traits in Hulun Buir Sheep.

Authors:  Ning Ding; Dehong Tian; Xue Li; Zhichao Zhang; Fei Tian; Sijia Liu; Buying Han; Dehui Liu; Kai Zhao
Journal:  Genes (Basel)       Date:  2022-04-09       Impact factor: 4.141

2.  Genomic Scan for Selection Signature Reveals Fat Deposition in Chinese Indigenous Sheep with Extreme Tail Types.

Authors:  Fuping Zhao; Tianyu Deng; Liangyu Shi; Wenwen Wang; Qin Zhang; Lixin Du; Lixian Wang
Journal:  Animals (Basel)       Date:  2020-04-29       Impact factor: 2.752

3.  Integrative analysis of Iso-Seq and RNA-seq data reveals transcriptome complexity and differentially expressed transcripts in sheep tail fat.

Authors:  Zehu Yuan; Ling Ge; Jingyi Sun; Weibo Zhang; Shanhe Wang; Xiukai Cao; Wei Sun
Journal:  PeerJ       Date:  2021-11-03       Impact factor: 2.984

4.  Transcriptome reveals key microRNAs involved in fat deposition between different tail sheep breeds.

Authors:  Xiaojuan Fei; Meilin Jin; Yuqin Wang; Taotao Li; Zengkui Lu; Zehu Yuan; Huihua Wang; Jian Lu; Kai Quan; Ran Di; Caihong Wei
Journal:  PLoS One       Date:  2022-03-01       Impact factor: 3.240

5.  The GWAS Analysis of Body Size and Population Verification of Related SNPs in Hu Sheep.

Authors:  Junfang Jiang; Yuhao Cao; Huili Shan; Jianliang Wu; Xuemei Song; Yongqing Jiang
Journal:  Front Genet       Date:  2021-05-20       Impact factor: 4.599

6.  A Transcriptomic Study of the Tail Fat Deposition in Two Types of Hulun Buir Sheep According to Tail Size and Sex.

Authors:  Hongying Fan; Yali Hou; Goutam Sahana; Hongding Gao; Caiye Zhu; Lixin Du; Fuping Zhao; Lixian Wang
Journal:  Animals (Basel)       Date:  2019-09-05       Impact factor: 2.752

7.  RNA-Seq based genetic variant discovery provides new insights into controlling fat deposition in the tail of sheep.

Authors:  Mohammad Reza Bakhtiarizadeh; Ali A Alamouti
Journal:  Sci Rep       Date:  2020-08-11       Impact factor: 4.379

8.  Estimates of genomic inbreeding and identification of candidate regions that differ between Chinese indigenous sheep breeds.

Authors:  Jiaxin Liu; Liangyu Shi; Yang Li; Liang Chen; Dorian Garrick; Lixian Wang; Fuping Zhao
Journal:  J Anim Sci Biotechnol       Date:  2021-08-05

9.  Development and Application of a High-Resolution Melting Analysis with Unlabeled Probes for the Screening of Short-Tailed Sheep TBXT Heterozygotes.

Authors:  Guang Yang; Caiyun Wang; Hong Su; Daqing Wang; Aolie Dou; Lu Chen; Teng Ma; Moning Liu; Jie Su; Xiaojing Xu; Yanyan Yang; Tingyi He; Xihe Li; Yongli Song; Guifang Cao
Journal:  Animals (Basel)       Date:  2022-03-21       Impact factor: 2.752

10.  All sheeps and sizes: a genetic investigation of mature body size across sheep breeds reveals a polygenic nature.

Authors:  C J Posbergh; H J Huson
Journal:  Anim Genet       Date:  2020-10-21       Impact factor: 2.884

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