Literature DB >> 31045216

Nonsense mutation-dependent reinitiation of translation in mammalian cells.

Sarit Cohen1, Lior Kramarski2, Shahar Levi1, Noa Deshe1, Oshrit Ben David1, Eyal Arbely1,2.   

Abstract

In-frame stop codons mark the termination of translation. However, post-termination ribosomes can reinitiate translation at downstream AUG codons. In mammals, reinitiation is most efficient when the termination codon is positioned close to the 5'-proximal initiation site and around 78 bases upstream of the reinitiation site. The phenomenon was studied mainly in the context of open reading frames (ORFs) found within the 5'-untranslated region, or polycicstronic viral mRNA. We hypothesized that reinitiation of translation following nonsense mutations within the main ORF of p53 can promote the expression of N-truncated p53 isoforms such as Δ40, Δ133 and Δ160p53. Here, we report that expression of all known N-truncated p53 isoforms by reinitiation is mechanistically feasible, including expression of the previously unidentified variant Δ66p53. Moreover, we found that significant reinitiation of translation can be promoted by nonsense mutations located even 126 codons downstream of the 5'-proximal initiation site, and observed when the reinitiation site is positioned between 6 and 243 bases downstream of the nonsense mutation. We also demonstrate that reinitiation can stabilise p53 mRNA transcripts with a premature termination codon, by allowing such transcripts to evade the nonsense mediated decay pathway. Our data suggest that the expression of N-truncated proteins from alleles carrying a premature termination codon is more prevalent than previously thought.
© The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31045216      PMCID: PMC6614817          DOI: 10.1093/nar/gkz319

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  59 in total

1.  Constraints on reinitiation of translation in mammals.

Authors:  M Kozak
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

2.  Evidence that translation reinitiation abrogates nonsense-mediated mRNA decay in mammalian cells.

Authors:  J Zhang; L E Maquat
Journal:  EMBO J       Date:  1997-02-17       Impact factor: 11.598

3.  Mechanism of escape from nonsense-mediated mRNA decay of human beta-globin transcripts with nonsense mutations in the first exon.

Authors:  Gabriele Neu-Yilik; Beate Amthor; Niels H Gehring; Sharif Bahri; Helena Paidassi; Matthias W Hentze; Andreas E Kulozik
Journal:  RNA       Date:  2011-03-09       Impact factor: 4.942

4.  Efficiency of reinitiation of translation on human immunodeficiency virus type 1 mRNAs is determined by the length of the upstream open reading frame and by intercistronic distance.

Authors:  B G Luukkonen; W Tan; S Schwartz
Journal:  J Virol       Date:  1995-07       Impact factor: 5.103

5.  Genotoxic exposure: novel cause of selection for a functional ΔN-p53 isoform.

Authors:  J P M Melis; E M Hoogervorst; C T M van Oostrom; E Zwart; T M Breit; J L A Pennings; A de Vries; H van Steeg
Journal:  Oncogene       Date:  2010-12-13       Impact factor: 9.867

6.  p53 Isoforms: An Intracellular Microprocessor?

Authors:  Marie P Khoury; Jean-Christophe Bourdon
Journal:  Genes Cancer       Date:  2011-04

7.  Reinitiation of mRNA translation in a patient with X-linked infantile spasms with a protein-truncating variant in ARX.

Authors:  Ching Moey; Scott Topper; Mary Karn; Amy Knight Johnson; Soma Das; Jorge Vidaurre; Cheryl Shoubridge
Journal:  Eur J Hum Genet       Date:  2015-08-26       Impact factor: 4.246

Review 8.  The scanning mechanism of eukaryotic translation initiation.

Authors:  Alan G Hinnebusch
Journal:  Annu Rev Biochem       Date:  2014-01-29       Impact factor: 23.643

9.  Reinitiation and other unconventional posttermination events during eukaryotic translation.

Authors:  Maxim A Skabkin; Olga V Skabkina; Christopher U T Hellen; Tatyana V Pestova
Journal:  Mol Cell       Date:  2013-06-27       Impact factor: 17.970

10.  A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation.

Authors:  Heinz Neumann; Susan M Hancock; Ruth Buning; Andrew Routh; Lynda Chapman; Joanna Somers; Tom Owen-Hughes; John van Noort; Daniela Rhodes; Jason W Chin
Journal:  Mol Cell       Date:  2009-10-09       Impact factor: 17.970

View more
  10 in total

1.  Identification of permissive amber suppression sites for efficient non-canonical amino acid incorporation in mammalian cells.

Authors:  Michael D Bartoschek; Enes Ugur; Tuan-Anh Nguyen; Geraldine Rodschinka; Michael Wierer; Kathrin Lang; Sebastian Bultmann
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

2.  SRSF7 maintains its homeostasis through the expression of Split-ORFs and nuclear body assembly.

Authors:  Vanessa Königs; Camila de Oliveira Freitas Machado; Benjamin Arnold; Nicole Blümel; Anfisa Solovyeva; Sinah Löbbert; Michal Schafranek; Igor Ruiz De Los Mozos; Ilka Wittig; Francois McNicoll; Marcel H Schulz; Michaela Müller-McNicoll
Journal:  Nat Struct Mol Biol       Date:  2020-03-02       Impact factor: 15.369

Review 3.  UPF1-Mediated RNA Decay-Danse Macabre in a Cloud.

Authors:  Daria Lavysh; Gabriele Neu-Yilik
Journal:  Biomolecules       Date:  2020-07-04

4.  MMADHC premature termination codons in the pathogenesis of cobalamin D disorder: Potential of translational readthrough reconstitution.

Authors:  Leire Torices; Javier de Las Heras; Juan Carlos Arango-Lasprilla; Jesús M Cortés; Caroline E Nunes-Xavier; Rafael Pulido
Journal:  Mol Genet Metab Rep       Date:  2021-01-27

5.  Generating a CRISPR knockout mouse through a strong premature termination codon: a cautionary tale.

Authors:  Qing Rex Lyu; Peng Yao; Joseph M Miano
Journal:  J Biomed Res       Date:  2020-12-25

Review 6.  Using unnatural amino acids to selectively label proteins for cellular imaging: a cell biologist viewpoint.

Authors:  Natalie Elia
Journal:  FEBS J       Date:  2020-07-22       Impact factor: 5.542

7.  X-CAP improves pathogenicity prediction of stopgain variants.

Authors:  Ruchir Rastogi; Peter D Stenson; David N Cooper; Gill Bejerano
Journal:  Genome Med       Date:  2022-07-29       Impact factor: 15.266

Review 8.  Translational Control in p53 Expression: The Role of 5'-Terminal Region of p53 mRNA.

Authors:  Agata Swiatkowska; Mariola Dutkiewicz; Paulina Zydowicz-Machtel; Joanna Szpotkowska; Damian M Janecki; Jerzy Ciesiołka
Journal:  Int J Mol Sci       Date:  2019-10-29       Impact factor: 5.923

9.  ZNF423 patient variants, truncations, and in-frame deletions in mice define an allele-dependent range of midline brain abnormalities.

Authors:  Ojas Deshpande; Raquel Z Lara; Oliver R Zhang; Dorothy Concepcion; Bruce A Hamilton
Journal:  PLoS Genet       Date:  2020-09-14       Impact factor: 5.917

10.  Premature Termination Codon in 5' Region of Desmoplakin and Plakoglobin Genes May Escape Nonsense-Mediated Decay through the Reinitiation of Translation.

Authors:  Marta Vallverdú-Prats; Ramon Brugada; Mireia Alcalde
Journal:  Int J Mol Sci       Date:  2022-01-07       Impact factor: 5.923

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.