Literature DB >> 31043755

The genome sequence of segmental allotetraploid peanut Arachis hypogaea.

David J Bertioli1,2,3, Jerry Jenkins4, Josh Clevenger5,6,7, Olga Dudchenko8, Dongying Gao5, Guillermo Seijo9,10, Soraya C M Leal-Bertioli5,6,11, Longhui Ren12, Andrew D Farmer13, Manish K Pandey14, Sergio S Samoluk9,10, Brian Abernathy5, Gaurav Agarwal11, Carolina Ballén-Taborda6, Connor Cameron13, Jacqueline Campbell15, Carolina Chavarro5,6, Annapurna Chitikineni14, Ye Chu16, Sudhansu Dash13, Moaine El Baidouri17,18, Baozhu Guo19, Wei Huang15, Kyung Do Kim5,20, Walid Korani5, Sophie Lanciano18,21,22, Christopher G Lui8, Marie Mirouze18,21,22, Márcio C Moretzsohn23, Melanie Pham8, Jin Hee Shin5,20, Kenta Shirasawa24, Senjuti Sinharoy25, Avinash Sreedasyam4, Nathan T Weeks26, Xinyou Zhang27,28, Zheng Zheng27,28, Ziqi Sun27,28, Lutz Froenicke29, Erez L Aiden8, Richard Michelmore29, Rajeev K Varshney14, C Corley Holbrook30, Ethalinda K S Cannon15, Brian E Scheffler31, Jane Grimwood4, Peggy Ozias-Akins6,16, Steven B Cannon26, Scott A Jackson32,33,34, Jeremy Schmutz35,36.   

Abstract

Like many other crops, the cultivated peanut (Arachis hypogaea L.) is of hybrid origin and has a polyploid genome that contains essentially complete sets of chromosomes from two ancestral species. Here we report the genome sequence of peanut and show that after its polyploid origin, the genome has evolved through mobile-element activity, deletions and by the flow of genetic information between corresponding ancestral chromosomes (that is, homeologous recombination). Uniformity of patterns of homeologous recombination at the ends of chromosomes favors a single origin for cultivated peanut and its wild counterpart A. monticola. However, through much of the genome, homeologous recombination has created diversity. Using new polyploid hybrids made from the ancestral species, we show how this can generate phenotypic changes such as spontaneous changes in the color of the flowers. We suggest that diversity generated by these genetic mechanisms helped to favor the domestication of the polyploid A. hypogaea over other diploid Arachis species cultivated by humans.

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Year:  2019        PMID: 31043755     DOI: 10.1038/s41588-019-0405-z

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  121 in total

1.  Genotypic Characterization of the U.S. Peanut Core Collection.

Authors:  Paul I Otyama; Roshan Kulkarni; Kelly Chamberlin; Peggy Ozias-Akins; Ye Chu; Lori M Lincoln; Gregory E MacDonald; Noelle L Anglin; Sudhansu Dash; David J Bertioli; David Fernández-Baca; Michelle A Graham; Steven B Cannon; Ethalinda K S Cannon
Journal:  G3 (Bethesda)       Date:  2020-11-05       Impact factor: 3.154

2.  Homoeologous exchanges occur through intragenic recombination generating novel transcripts and proteins in wheat and other polyploids.

Authors:  Zhibin Zhang; Xiaowan Gou; Hongwei Xun; Yao Bian; Xintong Ma; Juzuo Li; Ning Li; Lei Gong; Moshe Feldman; Bao Liu; Avraham A Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-09       Impact factor: 11.205

Review 3.  BSA‑seq and genetic mapping reveals AhRt2 as a candidate gene responsible for red testa of peanut.

Authors:  Kun Zhang; Mei Yuan; Han Xia; Liangqiong He; Jing Ma; Mingxiao Wang; Huiling Zhao; Lei Hou; Shuzhen Zhao; Pengcheng Li; Ruizheng Tian; Jiaowen Pan; Guanghui Li; Mahendar Thudi; Changle Ma; Xingjun Wang; Chuanzhi Zhao
Journal:  Theor Appl Genet       Date:  2022-02-15       Impact factor: 5.699

4.  Identification of Peanut Aux/IAA Genes and Functional Prediction during Seed Development and Maturation.

Authors:  Xiurong Zhang; Kun Zhang; Lu Luo; Yuying Lv; Yuying Li; Suqing Zhu; Bing Luo; Yongshan Wan; Xiansheng Zhang; Fengzhen Liu
Journal:  Plants (Basel)       Date:  2022-02-09

5.  Detection of a major QTL and development of KASP markers for seed weight by combining QTL-seq, QTL-mapping and RNA-seq in peanut.

Authors:  Zhihui Wang; Liying Yan; Yuning Chen; Xin Wang; Dongxin Huai; Yanping Kang; Huifang Jiang; Kede Liu; Yong Lei; Boshou Liao
Journal:  Theor Appl Genet       Date:  2022-03-09       Impact factor: 5.699

6.  Comprehensive analysis of coding sequence architecture features and gene expression in Arachis duranensis.

Authors:  Shuwei Dong; Long Zhang; Wenhui Pang; Yongli Zhang; Chang Wang; Zhenyi Li; Lichao Ma; Wei Tang; Guofeng Yang; Hui Song
Journal:  Physiol Mol Biol Plants       Date:  2021-02-18

7.  Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut.

Authors:  Sunil S Gangurde; Spurthi N Nayak; Pushpesh Joshi; Shilp Purohit; Hari K Sudini; Annapurna Chitikineni; Yanbin Hong; Baozhu Guo; Xiaoping Chen; Manish K Pandey; Rajeev K Varshney
Journal:  Int J Mol Sci       Date:  2021-04-26       Impact factor: 5.923

8.  TAR30, a homolog of the canonical plant TTTAGGG telomeric repeat, is enriched in the proximal chromosome regions of peanut (Arachis hypogaea L.).

Authors:  Dongying Gao; Eliza F M B Nascimento; Soraya C M Leal-Bertioli; Brian Abernathy; Scott A Jackson; Ana C G Araujo; David J Bertioli
Journal:  Chromosome Res       Date:  2022-01-19       Impact factor: 5.239

9.  An Improvised Hairy Root Transformation Method for Efficient Gene Silencing in Roots and Nodules of Arachis hypogaea.

Authors:  Bikash Raul; Senjuti Sinharoy
Journal:  Methods Mol Biol       Date:  2022

10.  Dissection of the Genetic Basis of Yield-Related Traits in the Chinese Peanut Mini-Core Collection Through Genome-Wide Association Studies.

Authors:  Xiaojing Zhou; Jianbin Guo; Manish K Pandey; Rajeev K Varshney; Li Huang; Huaiyong Luo; Nian Liu; Weigang Chen; Yong Lei; Boshou Liao; Huifang Jiang
Journal:  Front Plant Sci       Date:  2021-05-20       Impact factor: 5.753

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